Fitness data for b1024 in Escherichia coli BW25113

ycdS: predicted outer membrane protein (NCBI)
SEED: Biofilm PGA outer membrane secretin PgaA
KEGG: biofilm PGA synthesis protein PgaA

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.6 -4.7 compare
carbon source carbon source D-Mannose 0.5mM -0.6 -3.3 compare
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.6 -4.3 compare
M9 Acetate 0.5% aerobic -0.5 -4.5 compare
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM -0.5 -3.5 compare
M9 Acetate 0.5% aerobic -0.5 -4.2 compare
plasmid transformation vcDART vector transformation; liquid outgrowth assay -0.5 -3.4 compare
mixed community Mixed culture; Bdellovibrio bacteriovorus HD100 1:1 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan -0.5 -4.2 compare
M9 Glucose 2%, 20 mM NO3- anaerobic -0.4 -3.9 compare
predation 3 hr rep1_Tiberius_100fold_dilution -0.4 -3.4 compare
mixed community Mixed culture; Bdellovibrio bacteriovorus HD100 1:10 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan -0.4 -3.7 compare
retron_ec_48_control retron_Ec_48_control -0.4 -3.4 compare
ppi ppI -0.4 -3.4 compare
stress LB Aerobic with Zinc Pyrithione 0.0000025 mM -0.4 -3.2 compare
stress LB Anaerobic with Nitrofurantoin 0.000015625 mM -0.4 -3.1 compare
stress LB Anaerobic with Benzethonium chloride 0.000015625 mM -0.4 -3.1 compare
stress LB Aerobic with Benzethonium chloride 0.000015625 mM -0.4 -3.0 compare
carbon source carbon source D-Glucose 5mM -0.4 -2.2 compare
phage T7_phage 0.0015625 MOI TC1 +0.4 +3.1 compare
stress Bacitracin 1 mg/ml +0.5 +3.8 compare