Fitness data for b1008 in Escherichia coli BW25113

ycdI: hypothetical protein (NCBI)
SEED: Predicted reductase RutE in novel pyrimidine catabolism pathway
KEGG: putative NADH dehydrogenase/NAD(P)H nitroreductase RutE

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
motility outer cut, LB soft agar motility assay -1.4 -2.7 compare
stress Tetracycline 0.0004 mg/ml -1.2 -3.1 compare
stress Chloramphenicol 0.005 mg/ml -1.1 -2.4 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -1.1 -1.4 compare
stress Vanillin 5 mM -1.1 -2.8 compare
carbon source D-Glucose (C) MOPS -1.0 -2.7 compare
stress LB Anaerobic with Levofloxacin 0.0000000625 mM -0.9 -1.7 compare
balo Mixed culture, Halobacteriovorax-10 -0.9 -1.5 compare
carbon source Ying_Others16 rep A; time point 2 -0.9 -2.4 compare
stress Aluminum chloride 5 mM -0.8 -1.4 compare
stress LB Aerobic with Phenazine ethosulfate 0.0000625 mM +0.8 +2.3 compare
control PBS_cage_1_mouse_2_Cecum_40 hr +0.8 +2.9 compare
plasmid transformation vcDART vector transformation; liquid outgrowth assay +0.8 +1.5 compare
phage Ste41 +0.8 +2.2 compare
phage R2_N4_T1_phage10 +1.1 +2.0 compare
motility inner cut, LB soft agar motility assay +1.1 +3.0 compare
control PBS_cage_1_mice _Feces_40 hr +1.3 +2.3 compare
stress LB Aerobic with Phenazine ethosulfate 0.0000625 mM +1.3 +3.4 compare
control PBS_cage_1_mice _Feces_22 hr +1.9 +5.1 compare
control PBS_cage_1_mice _Feces_16 hr +2.0 +3.3 compare