Pairwise Alignments

Query, 1087 a.a., Multidrug transporter AcrB from Rhodanobacter sp. FW510-T8

Subject, 1038 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  299 bits (765), Expect = 8e-85
 Identities = 298/1073 (27%), Positives = 480/1073 (44%), Gaps = 93/1073 (8%)

Query: 23   PILAIAALLL----GLVAVMITPREEEPQIDVTMANVMVPFPGADVRDVENLVAFPLEQK 78
            PI A+   +L    GL++      +  P ID+    V    PGA    +E  VA  LE  
Sbjct: 11   PIPAVMLFVLLTFGGLLSFNAMKVQNFPDIDLPTVTVSASLPGAAPSQLETDVARKLENS 70

Query: 79   LAEIEGVKHVYSVSRPGMAVMTVEFQVGVPRQAAIVRLYNQVFQNQGFVPPGLGVGPPLV 138
            +A ++G+KH+ +  + G A + VEF++  P Q A+  + + V + +  +P    V  P+V
Sbjct: 71   IATVQGLKHITTKVQDGAATLIVEFRLEKPVQEAVDDVRSAVQRVRADLPAD--VRDPVV 128

Query: 139  RPMGIDDVPVMALTLWSDLPAQGPVQLAEVAHTLETELKRVPGTRDVYTIGAPARAVVVE 198
              + +   PV+A T+ S       +    V + +   L  +PG   V  +G   R V V+
Sbjct: 129  TKLDLAGQPVLAFTIASSQMDNEALSWY-VDNDVTKRLLALPGVGAVNRVGGATRQVHVD 187

Query: 199  LDAAKLAAYGMTPGDLSNALKAANAVSQAGDRVGGERDVPVTAGRFLADAAEVSQLVIGL 258
            LD  KL A G + GD+S  L+     S  G    G  + PV     +  A +++ + I L
Sbjct: 188  LDPVKLQALGASAGDISRQLRQVQTESAGGRFDLGGSEQPVRTMATVKSADQLADMQIVL 247

Query: 259  KNGQPVFLSDVATIRQGADLPDSYAWFGAPAGKAGPATGNAPAVTIAVAKKPGTNAADIT 318
             +G+ + L  VA I      P           +A       P V   VA+  G +  ++ 
Sbjct: 248  TDGRRIRLDQVARISDTIAEP-----------RAAALLNGKPVVGFEVARSRGASEVEVG 296

Query: 319  GAIRRRLDALQGVAIPAGVHVAVTRDYGQTATDKADKLIHKLIF-ATLSVVLLVLLALSW 377
             A+++ L  ++  A    + +    ++     ++ +  +H L   A L+VV++ L    W
Sbjct: 297  HAVQKALADMR--AQRPDIELTEAFNFVDPVEEEYNGSLHLLYEGAILAVVVVWLFLRDW 354

Query: 378  RAAVVVGSAVIVTLALTLFASWAMGFTINRVSLFALIFSIGILVDDAIVVVENIHRHMAL 437
            RA  V   A+ +++         +GF++N +SL AL   +GILVDDAIV VENI RH+ +
Sbjct: 355  RATFVSAVALPMSVIPAFIGMHLLGFSVNVISLLALSLVVGILVDDAIVEVENIVRHLRM 414

Query: 438  GGRTLREAIPEAVGEVGGPTILATFTVIAALLPMAFVSGLMGPYMRPIPINASAGMLLSL 497
             G+T  +A  EA  E+G   I  TFT+IA  LP AF+SG+ G + +     A+  +  SL
Sbjct: 415  -GKTPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFKQFGWTAALAVFASL 473

Query: 498  AVALVVTPWLALRLLGHGHPAGEAATAAAHESAGGWLPRLFQRVMTPFLHGDRAPRRRRR 557
             VA V+TP +A  +L               E+  GWL R + R +    H          
Sbjct: 474  VVARVLTPMMAAYML---------KPVVTAETEPGWL-RWYMRAVEWSTH---------N 514

Query: 558  LFAVMGLLVLAAVG-LVVVKAVVLKMLPFDNKSEFQVVVDMPEGSTLERTNRLLGELAQA 616
             F  M L  L   G L ++  +    +P D+ S+ QV + +  GSTL +T     E  + 
Sbjct: 515  RFKTMVLATLFFFGSLAMIPLLKTGFIPPDDNSQTQVYLSLAPGSTLAQTTAAAEETRRR 574

Query: 617  VAEVPEVKD-WQGYAGTAAPITFNGLVRQYYLRSGPIVGDLQVSLVDKHERQRQSHAIAL 675
            V ++P VK  +   AG +A     G     +         L + L  + +R R+   I  
Sbjct: 575  VMQIPHVKSVYTTVAGGSA----GGDPFASFGTPETRKATLTIKLDPRGDRPRK-QVIEN 629

Query: 676  AVRPALAKIGARYGASVKVVEVPPGPPVLAPIVAEVYGPDYATVRKVALGLERDFKANPD 735
             +R AL  +    G    V     G   +  +     G D   +   A  +E+D +  P 
Sbjct: 630  QIRSALETLP---GVRSTVGLGGSGEKYILALT----GEDPVALASAASAVEKDLRTIPG 682

Query: 736  IVDVDTSVEAQAPRDVLVVDRARAARLGLDQAAIAQALRTALSGD-DASYLMDGHAKYAV 794
            + ++ ++     P   +  D ARAA LG+  +AIA+ LR A  GD D S      A+  V
Sbjct: 683  LGNITSTASLVRPEIAVRPDFARAADLGVTSSAIAETLRVATLGDYDQSLAKLNLAQRQV 742

Query: 795  PIRLRLGAGDQAAMSQLLALRVRARGGALVPLSEVVAVQPAQREQAIWHKDLLPYATVTG 854
            PI ++L    +  +  L  L V    G  V L++V ++        I   D         
Sbjct: 743  PIVVKLEDSARQDIDLLGRLSVPGTRGP-VMLNQVASLSMEGGPAVIDRYDRSRNVNFEI 801

Query: 855  DDAGATDSPLYGMFSLVGKLGHDKVAGQLLQQHFIAQPTDTTDASVKWDGEWQITYETFR 914
            + +G            VG LG  K A Q L       P     A V   G+ ++  E F 
Sbjct: 802  ELSG------------VG-LGDAKAAVQKLPS-IQKLPPGVRIAEV---GDAEVMTELFA 844

Query: 915  DMGLAYSAGLLLIYLLVVGQFRSYVVPLIIMAPIPLTVIGVMPGHALVGAQYTATSMIGM 974
              GLA   G+L IY+++V  F+ ++ P+ I+  +PL + G   G  +     +  S+IG+
Sbjct: 845  SFGLAMLTGVLCIYIVLVLLFKDFLHPVTILCALPLALGGAFVGLLIGQKALSMPSLIGL 904

Query: 975  IALAGIIVRNSILLIDFINHALAA----GQPLREAVIDAAAVRAKPIVLTGVAAMIG--- 1027
            I L GI  +NSILL+++   A+ A    G    +A+ DA   RA+PI++T +A   G   
Sbjct: 905  IMLMGIATKNSILLVEY---AIVARRDHGMSRWDALRDACHKRARPIIMTTLAMGAGMLP 961

Query: 1028 ---GFFIIDDPIFQGLAVSLIFGILVSTALTLLVIPLLY------YAWLQRRV 1071
               GF   D      +A+++I G++ ST L+LLV+P ++        W++R V
Sbjct: 962  IAVGFGSADSSFRSPMAMAVIGGLITSTVLSLLVVPAVFTYVDDIEHWIRRTV 1014