Pairwise Alignments

Query, 485 a.a., RNA polymerase factor sigma-54 from Rhodanobacter sp000427505 FW510-R12

Subject, 533 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

 Score =  321 bits (823), Expect = 3e-92
 Identities = 205/531 (38%), Positives = 286/531 (53%), Gaps = 49/531 (9%)

Query: 1   MKPALQFRLHQQLTLTPQLQQAIRLLQLSQLELEAELRQIAESNPLLE-FAEEVEDEEAT 59
           MK  L  R+ Q L LTPQLQQ+IRLLQLS LEL  E+ Q+ + NP LE  AEE   EE  
Sbjct: 1   MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFG 60

Query: 60  EDAVV------------ESDYPSVEAVAATAGDDGETS----------------DWSDGG 91
            DAV             E D+    A  +TA  +  T+                DW   G
Sbjct: 61  LDAVDTPVQRDEVAEAGEGDFTPPSASTSTASTETSTTAADSDGPAAEIAEREPDWEGDG 120

Query: 92  VAETPIDFSSNSVGSNSGSGTRGDE---DFEPQNAAPETLQQHLLWQLNLASFTPRQHLI 148
             +   D S     + +     GD+   D      + E+LQ  L  Q      +      
Sbjct: 121 TVDMAPDDSEWGSDAPARQNNLGDDERADATELARSQESLQSFLHRQALSLRLSENDSAA 180

Query: 149 ATVLIDALNPAGYLAEGLEAILAALPA----AFDASIAEIEEVRRCLQGFDPAGVASLDL 204
              LI++LN  GYL + L A+ + L       FD  +   +     LQ  +P GV + DL
Sbjct: 181 LRFLIESLNDDGYLEDSLPALASGLAGDDNDQFDDLVHHFQVALGLLQSLEPVGVGARDL 240

Query: 205 RDCLRVQLEQF---DPDTPQRD------LALRIVDTELELLARNDITRLARRLRTDENDV 255
            +CL +QL      D D  + D       A+ I    +ELLAR D  RLA   R++E  V
Sbjct: 241 GECLSIQLRALAAEDEDGEEEDRAQVYKTAIAICKQPMELLARRDFKRLATLTRSNEELV 300

Query: 256 ADAAVLIRSLDPRPGAALDATPVEYVAPDVYALRDG----TRWRVSLNPDAQPRLGLNQH 311
             A  +I  L+P+PG          V PDV   + G     ++RV LNP+  PRL ++  
Sbjct: 301 RLALQVIARLEPKPGRRFVDVERNIVIPDVIVTKTGRGTNVKFRVMLNPEVMPRLRVHDI 360

Query: 312 YCGLIAQARGEDASWMRGQLQEARWLIKSLESRAETLLKVAEAIVRRQSAFLDYGPEAMH 371
           Y G +   +GE +  +  +LQEARW IK+++ R +T+L+V+ AIV RQ ++  +G  AM 
Sbjct: 361 YAGALKSHKGEGSQALSQRLQEARWFIKNIQQRFDTILRVSNAIVERQKSYFVHGELAMR 420

Query: 372 PLVLREVAEEVGMHESTISRVTTRKYLHTPRGTFELKYFFSSGVSTEDGGSASATAIQAM 431
           PLVLRE+A+E+G+HESTISRVTT KY+ TP GT ELKYFF S + TE GG+AS+TA++A+
Sbjct: 421 PLVLREIADELGLHESTISRVTTAKYMATPFGTVELKYFFGSALGTETGGNASSTAVRAL 480

Query: 432 LRKLIDAEDVRKPLSDLAIAEELQRKGIQVARRTVAKYREGLRIPTSSERQ 482
           +++ + +E ++KPLSD  I+E L+ +GI+ ARRTVAKYRE LRI  ++ R+
Sbjct: 481 IKQFVSSESIKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRK 531