Pairwise Alignments

Query, 485 a.a., RNA polymerase factor sigma-54 from Rhodanobacter sp000427505 FW510-R12

Subject, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

 Score =  278 bits (710), Expect = 4e-79
 Identities = 190/508 (37%), Positives = 277/508 (54%), Gaps = 43/508 (8%)

Query: 3   PALQFRLHQQLTLTPQLQQAIRLLQLSQLELEAELRQIAESNPLLEFAEEVEDEEATEDA 62
           P L  R  Q L +TPQLQQAI+LL LS LE+EA +    E NPLLE  +   D+   E +
Sbjct: 5   PRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLE--QGAADDGGREGS 62

Query: 63  VVESDYPSVEAVAATAGDDGETSDWSDGGVAETPIDFS-----------SNSVGSNSGSG 111
            V+ +  +    A T   D   +    G  A++P+D             ++ +G+ SGSG
Sbjct: 63  GVDREVEAPTLAAETGASDDLIAQGLGG--ADSPLDVDHGAETFIDDGPADRMGAGSGSG 120

Query: 112 T---------RGDE-DFEP-QNAAPETLQQHLLWQLNLASFTPRQHLIATVLIDALNPAG 160
           +          G+  DF+   NAAP +LQ+HL+ Q   ++ +    LIAT LI  ++ AG
Sbjct: 121 SLDMLGGGSGSGEAVDFDSFANAAP-SLQEHLMDQAR-STLSGMDLLIATQLIGQISEAG 178

Query: 161 YLAEGLEAILAALPAAFDASIAEIEEVRRCLQGFDPAGVASLDLRDCLRVQLEQFDPDTP 220
           YL    EA L          +  +E V   +  FDP GV +  L +CL +Q ++ +   P
Sbjct: 179 YL----EANLLQTAHGLGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYDP 234

Query: 221 --QRDLALRIVDTELELLARNDITRLARRLRTDENDVADAAVLIRSLDPRPGAALDATPV 278
             QR LA       L+LLA+  + +L R    DE D+AD    +R  DP+PG    +   
Sbjct: 235 CIQRLLA------NLDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSA 288

Query: 279 EYVAPDVYALRDGTRWRVSLNPDAQPRLGLNQHYCGLIAQARGEDAS--WMRGQLQEARW 336
             V PD++  R    W + +N    PR+ +N+ Y   +A    + AS  W+   L  A W
Sbjct: 289 TPVTPDLFVSRTREGWGIEVNSATLPRVLVNRTYYVELAGGPQDKASKAWLADCLASANW 348

Query: 337 LIKSLESRAETLLKVAEAIVRRQSAFLDYGPEAMHPLVLREVAEEVGMHESTISRVTTRK 396
           L+K+L+ R +T++KVA  IVR+Q  F   G   + PL LR VA+ + MHEST+SRVT+ K
Sbjct: 349 LVKALDQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNK 408

Query: 397 YLHTPRGTFELKYFFSSGVSTEDG-GSASATAIQAMLRKLIDAEDVRKPLSDLAIAEELQ 455
           YL  PRG +ELKYFF+SGV+  DG G+ SA A+++ ++ LI AE+    LSD  + + L+
Sbjct: 409 YLSCPRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDLLR 468

Query: 456 RKGIQVARRTVAKYREGLRIPTSSERQR 483
            KG+ +ARRTVAKYRE + I +S +R+R
Sbjct: 469 AKGMDIARRTVAKYRESMGIGSSVQRRR 496