Pairwise Alignments

Query, 485 a.a., RNA polymerase factor sigma-54 from Rhodanobacter sp000427505 FW510-R12

Subject, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

 Score =  436 bits (1120), Expect = e-126
 Identities = 237/495 (47%), Positives = 323/495 (65%), Gaps = 12/495 (2%)

Query: 1   MKPALQFRLHQQLTLTPQLQQAIRLLQLSQLELEAELRQIAESNPLLEFAEEVEDEEATE 60
           MKP+L  ++ QQLT+TPQLQQAIRLLQLS L+L+ E+++  ESNP+LE  E+ ED + ++
Sbjct: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFDNSD 60

Query: 61  DAVVESDYPSVEAV-------AATAGDDGETSDWSDGGVAETPIDFSSNSVGSNSGSGTR 113
                ++      V       +  + D+ E  +WS+    E P+D +   +   S S   
Sbjct: 61  PMADNAENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQTSASSLP 120

Query: 114 GDED----FEPQNAAPETLQQHLLWQLNLASFTPRQHLIATVLIDALNPAGYLAEGLEAI 169
            ++D    F  + +A E+LQ HLLWQLNLA  +    LIA  LID++N  GYL + LE I
Sbjct: 121 SNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLEEI 180

Query: 170 LAALPAAFDASIAEIEEVRRCLQGFDPAGVASLDLRDCLRVQLEQFDPDTPQRDLALRIV 229
            A      D  + E+E V   +Q F+PAGV + +L +CL +QL Q    TP    A R+V
Sbjct: 181 CAGFDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPWMTEAKRLV 240

Query: 230 DTELELLARNDITRLARRLRTDENDVADAAVLIRSLDPRPGAALDATPVEYVAPDVYALR 289
              ++LL   D ++L RR++  E+++     L++SL+PRPG+ ++++  EYV PDV   +
Sbjct: 241 TDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEYVVPDVIVRK 300

Query: 290 DGTRWRVSLNPDAQPRLGLNQHYCGLIAQA-RGEDASWMRGQLQEARWLIKSLESRAETL 348
           D  RW V LN +A PRL +N  Y G + +A    D ++MR QLQEARW IKSL+SR ETL
Sbjct: 301 DSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL 360

Query: 349 LKVAEAIVRRQSAFLDYGPEAMHPLVLREVAEEVGMHESTISRVTTRKYLHTPRGTFELK 408
           +KVA  IV  Q  FLD+G EAM PLVL ++AE VGMHESTISRVTT+KY+HTPRG +ELK
Sbjct: 361 MKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYELK 420

Query: 409 YFFSSGVSTEDGGSASATAIQAMLRKLIDAEDVRKPLSDLAIAEELQRKGIQVARRTVAK 468
           YFFSS VST +GG  S+TAI+A+++KL+ AE+ +KPLSD  IA  L+ +GIQVARRTVAK
Sbjct: 421 YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK 480

Query: 469 YREGLRIPTSSERQR 483
           YRE L I  SSER+R
Sbjct: 481 YRESLGIAPSSERKR 495