Pairwise Alignments

Query, 485 a.a., RNA polymerase factor sigma-54 from Rhodanobacter sp000427505 FW510-R12

Subject, 477 a.a., RNA polymerase sigma-54 factor RpoN from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  401 bits (1031), Expect = e-116
 Identities = 231/489 (47%), Positives = 312/489 (63%), Gaps = 20/489 (4%)

Query: 1   MKPALQFRLHQQLTLTPQLQQAIRLLQLSQLELEAELRQIAESNPLLEFAEEVEDEEATE 60
           MK  LQ RL QQL +TPQLQQAIRLLQLS LEL+ EL+Q  E+NPLLE   ++ DE  T+
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENNPLLE-QTDLHDEIDTQ 59

Query: 61  DAVVESDYPSVEAVAATAGDDGETSDWSDGGVAETPIDFSSNSV-GSNSGSGTRGD--ED 117
                    + +A+        E  +  +    E P+D S + +  + + SG  GD  +D
Sbjct: 60  QPQDNDPLDTADAL--------EQKEMPE----ELPLDASWDEIYTAGTPSGPSGDYIDD 107

Query: 118 FEP--QNAAPETLQQHLLWQLNLASFTPRQHLIATVLIDALNPAGYLAEGLEAILAALPA 175
             P  Q    ++LQ +L+WQ+ L  F+     IAT ++DA++  GYL   L+ I  ++  
Sbjct: 108 ELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLDEIRESM-G 166

Query: 176 AFDASIAEIEEVRRCLQGFDPAGVASLDLRDCLRVQLEQFDPDTPQRDLALRIVDTELEL 235
             +  + E+E V + +Q FDP GVA+ DLRDCL +QL QFD  TP  + A  I+   L+L
Sbjct: 167 DVEVDLDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPWLEEARLIICDHLDL 226

Query: 236 LARNDITRLARRLRTDENDVADAAVLIRSLDPRPGAALDATPVEYVAPDVYALRDGTRWR 295
           LA +D   L R  R  E  + +A  LI+SLDPRPG ++     EYV PDV   +   RW 
Sbjct: 227 LANHDFRTLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWT 286

Query: 296 VSLNPDAQPRLGLNQHYCGLIAQARGE-DASWMRGQLQEARWLIKSLESRAETLLKVAEA 354
           V LN D+ PRL +NQHY  +   AR + D+ ++R  LQ+A+WLIKSLESR +TLL+V+  
Sbjct: 287 VELNSDSIPRLQINQHYAAMCNSARNDADSQFIRSNLQDAKWLIKSLESRNDTLLRVSRC 346

Query: 355 IVRRQSAFLDYGPEAMHPLVLREVAEEVGMHESTISRVTTRKYLHTPRGTFELKYFFSSG 414
           IV +Q AF + G E M P+VL ++A+ V MHESTISRVTT+KYLH+PRG FELKYFFSS 
Sbjct: 347 IVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSH 406

Query: 415 VSTEDGGSASATAIQAMLRKLIDAEDVRKPLSDLAIAEELQRKGIQVARRTVAKYREGLR 474
           V+TE GG AS+TAI+A+++KLI AE+  KPLSD  +   L  +GI VARRTVAKYRE L 
Sbjct: 407 VNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLS 466

Query: 475 IPTSSERQR 483
           IP S++R++
Sbjct: 467 IPPSNQRKQ 475