Pairwise Alignments

Query, 308 a.a., tRNA pseudouridine(55) synthase TruB from Rhodanobacter sp000427505 FW510-R12

Subject, 318 a.a., tRNA pseudouridine(55) synthase TruB from Dickeya dadantii 3937

 Score =  236 bits (601), Expect = 7e-67
 Identities = 138/313 (44%), Positives = 180/313 (57%), Gaps = 12/313 (3%)

Query: 5   PRIPFRDLHGIVLLDKPPGLSSNQALQAVRRLLRASKGGHTGALDPLATGLLPLCFGEAT 64
           PR   RD+HG++LLDKP G SSN  LQ V+RL  A+K GHTGALDPLATG+LP+C GEAT
Sbjct: 4   PRRRGRDIHGVLLLDKPQGASSNDVLQKVKRLFNANKAGHTGALDPLATGMLPVCLGEAT 63

Query: 65  KLAGSLLGARKAYLAECRLGVTTDTADSEGEVVQQRPVPELDDARVEAALARLRGRIQQV 124
           K +  LL A K Y    RLG  TDT+D++G V+Q+RPV    D  ++ AL   RG  QQV
Sbjct: 64  KFSQYLLDADKRYRVIARLGQRTDTSDADGNVIQERPVAFPHDLLMQ-ALDSFRGETQQV 122

Query: 125 PPMYSALKQGGERLYAKARRGETVELAPREVAVHRLELLAREGDTLQLLVECGSGTYVRS 184
           P MYSALK  G  LY  AR+G  V    R++ V+ L+ +  EGD L+L + C  GTY+R+
Sbjct: 123 PSMYSALKYQGRPLYEYARQGLVVPREARDITVYELQFIRWEGDELELEIHCSKGTYIRT 182

Query: 185 LAVDLGEDLGCGAHLTALRRIWVEPFREPRMVTLTQLEQAAEQGD-------EALLAWLL 237
           +  DLGE LGCGAH+  LRR+ V  +   RMVTL QL+   EQ +       E L   LL
Sbjct: 183 IIDDLGEKLGCGAHVIYLRRLQVATYPIERMVTLEQLQALREQAEAQEQPIGELLDVLLL 242

Query: 238 PVSAGLSDLPVLRLDETQSMAISRGQQIALPGLPEVGHCAAYASD-GALLALLEADAEGR 296
           P+   +   P + L    +  +  GQ +     P  G       D    + + E D EGR
Sbjct: 243 PMDTAVQAFPEVNLSPVVAGYLKLGQAVRAAATPAEGMVRITEGDEHRFIGMGEIDDEGR 302

Query: 297 A---RIVRGFNLP 306
               R+V  + +P
Sbjct: 303 VAPRRLVVEYPVP 315