Pairwise Alignments

Query, 1082 a.a., multidrug efflux RND transporter permease subunit from Rhodanobacter sp000427505 FW510-R12

Subject, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

 Score =  964 bits (2493), Expect = 0.0
 Identities = 512/1063 (48%), Positives = 708/1063 (66%), Gaps = 37/1063 (3%)

Query: 1    MPSFFIDRPIFAWVVAILIALGGVLSILNLGVESYPSVAPPSVVVNAVYPGASADTTEKN 60
            M  FFI RP FAWVVA+ I+L G+L I +L V  YP+VAPP + + A YPGASA    ++
Sbjct: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60

Query: 61   VTQVIEQQLTGIDHLLYFSSSSSSSGRASITLTFENGTNPDIAQVQVQNKVSLATPRLPS 120
            VT +IEQ L G   LLY+ S+++S+G A + +TFE GT+PD+AQV VQN++  A  R+P 
Sbjct: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120

Query: 121  EVTKQGVVVAKANTGFLEVVALRSD-NPAIDRARLNDIVASQVLDQIARVPGVGSTQQFG 179
             V  QG+ V +A++GFL + AL S      D   L D  A  + +++ RVPGVG  Q F 
Sbjct: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180

Query: 180  GEYAMRIWLDPDKLQGYGLSASQALAAVTAQNVQFAAGSLGSDPAANGQGISVTVATEGR 239
             E AMR+W+DP KL GYGLS     +A+  QNVQ  AGS GS P A+ Q ++ T+A +G 
Sbjct: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240

Query: 240  FTTPEQFENIILRANNDGTTVKLGDVAWVSFGAGVYGFNTTYNGLPVAAFAIQLLPGANA 299
              TPE F  I+LRAN DG++V+LGDVA ++ G+  Y  +   NG P  A A+QL PGANA
Sbjct: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300

Query: 300  LDVATAVHGKMDELAGSFPQGVSWFTPYDSTTFVKVSVNEVVHTLIEAIVLVFLVMLIFL 359
            +  AT V  ++ EL+  FP+GV +  PYD++ FV V++ +V+HTLIEA+VLVFLVM +FL
Sbjct: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360

Query: 360  QNIRATIIPTLVIPVALLGTFIGMLLLGFTINQLTLFGMVLAIGIVVDDAIVVIENVERI 419
            QN+R T++P++V+PV LLGT + M LLGF++N +T+FGMVLAIGI+VDDAIVV+ENVER+
Sbjct: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420

Query: 420  MTEDGLSPKEATKKAMGQITGAVVGITVVLIAVFVPSSFQPGAAGVIYKQFALTIAMSVA 479
            M E+GLSP EAT KAMGQ++GA++GIT+VL AVF+P +F  G+ GVIY+QF++++A+S+ 
Sbjct: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480

Query: 480  FSAFLALSFTPALCASFLTPV---HEEKKNFVFRWFNTAFGKITHTYTGHIGSAVRHAPR 536
            FS FLAL+FTPALCA+ L PV   H EK  F F  FN  F ++T  Y+      V  A R
Sbjct: 481  FSGFLALTFTPALCATLLKPVPHGHHEKAGF-FGAFNRGFARVTERYSLLNSELVARAGR 539

Query: 537  WVMVFVLISVLTGFLYTRLPGSFLPEEDQGFALAVVQLPPGASLQRTNAVMRQILTVLKQ 596
            W++ +V I V+ G+ Y RLP +F+P ED G+++  VQLPPGAS  RT+     +   L  
Sbjct: 540  WMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLMS 599

Query: 597  DPAVDGVVQIAGFSFLGMGENVGMSFIRLKPWGERGWAPDQKAAQEQHDKLVKEGKAKPI 656
              AV     ++GFSF G G+N  ++F   K W +R  A   +A                 
Sbjct: 600  RDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRDKAQSAEA----------------- 642

Query: 657  DLGVTAAEFIQRANGAVQSVRDAQIFIVNVPTVQGLGQFGGFDMYLQDRGGTGRDALTAA 716
            +     A+F    +GA+ +V          P + GLG  GGF + L DRGG GR+AL AA
Sbjct: 643  ETAAINAQFAANGDGAITAVMP--------PPIDGLGNSGGFALRLMDRGGLGREALLAA 694

Query: 717  RNTLLGAASQNPLLVGVRPNGLEDAPQLRLDVDRTQALSMGLSVGDIYNAISLMLAPVYV 776
            R+ LL  A+ NP+++     GL +APQLRL +DR +A ++G+S   I + ++       +
Sbjct: 695  RDQLLARANGNPVILYAMMEGLAEAPQLRLHIDREKARALGVSFEAINSTLATAFGSAVI 754

Query: 777  NDFSYGGRVKRVIMQADSPHRMGPEAFQHIFTPSTRTNADGTPQMIPLSNVVQAKWQMAS 836
            NDF+  GR +RV++QA+   RM PE+   ++ P    NA+G  + +P S  V  +W+   
Sbjct: 755  NDFTNAGRQQRVVVQAEQGERMTPESVLRLYAP----NANG--EQVPFSAFVTTQWEEGP 808

Query: 837  PSLVRYNGYSAVEIVGSPAPGHASGEAMNIMQKIVSDDLPHGFGYDWTGQSYQEILSGNT 896
              LVRYNGY ++ I G  +PGH++G+AM  M+++VS +LP G GY WTG SYQE +S   
Sbjct: 809  VQLVRYNGYPSIRIAGDASPGHSTGQAMAEMERLVS-ELPPGIGYAWTGLSYQEKVSSGQ 867

Query: 897  AILLMVLSVVIVFLCLTALYESWSIPVSVLLVVPLGILGAVVFTLLRGLPDDIYFKIGVI 956
            A  L  L++++VFL L ALYESW+IP++V+L+VP+G LGAV    L G+P+D+YFK+G+I
Sbjct: 868  AASLFALAILVVFLLLVALYESWAIPLTVMLIVPIGALGAVWAVTLTGMPNDVYFKVGLI 927

Query: 957  TVMGLAAKNAILIVEFAVIEQRQGRTLREAVVDAARLRLRPILMTSIAFIGGVFPLFVST 1016
            T++GLAAKNAILIVEFA     +G +L +A ++AARLR RPI+MTS+AFI GV PL +++
Sbjct: 928  TIIGLAAKNAILIVEFAKELWEKGYSLCDAAIEAARLRFRPIVMTSMAFILGVVPLAIAS 987

Query: 1017 GAGANARHAIGTGVIGGMLFATFLGVLLIPVFYVVVRRLLGDK 1059
            GAGA ++ AIGTGVIGGML AT LGV+ +PV +V V  LL  K
Sbjct: 988  GAGAASQRAIGTGVIGGMLSATLLGVVFVPVCFVWVLTLLKRK 1030