Pairwise Alignments

Query, 1404 a.a., DNA-directed RNA polymerase subunit beta' from Rhodanobacter sp000427505 FW510-R12

Subject, 1399 a.a., DNA-directed RNA polymerase subunit beta' from Pseudomonas putida KT2440

 Score = 1986 bits (5145), Expect = 0.0
 Identities = 991/1373 (72%), Positives = 1160/1373 (84%), Gaps = 2/1373 (0%)

Query: 1    MKDLLNLFNQQRTTPDFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAA 60
            MKDLLNL   Q    +FDAI+I LASPE+IRSWS+GEVKKPETINYRTFKPERDGLFCA 
Sbjct: 1    MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSL 120
            IFGPVKDYECLCGKYKR+KHRGV+CEKCG EV LAKVRRERM HIELASP AHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL 120

Query: 121  PSRIGLMLDMTLRDIERILYFEAFVVIDPGMTALERGQLLSEDQYLEATEEHGDEFDARM 180
            PSRIGL++DMTLRDIER+LYFE++VVIDPGMT LE+GQLL+++QY EA EE GD+FDARM
Sbjct: 121  PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM 180

Query: 181  GAEAVFHLLKSLDLPGEVIRLKEEIASTNSETKLKRLTKRVKLIEAFLESGNKPEWMVLT 240
            GAEAV  LL ++DL  E+ RL+EEI  TNSETK+K+L+KR+KL+EAF  SGN PEWMVLT
Sbjct: 181  GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL+L+APDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT 360
            E+VDALLDNGRRGRAITG+NKR LKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI VGPT
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360

Query: 361  LRLHQCGLPKKMALELFKPFIFAKLQARGEATTIKAAKKLVEREEGQVWDILEEVIREHP 420
            LRLHQCGLPKKMALELFKPFIF KL+ RG ATTIKAAKK+VERE  +VWD+L EVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA 480
            VLLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVC A+NADFDGDQMAVHVPL++EAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RTLMMSSNNILSPANGEPIIVPTQDVVLGLYYMTRELINAKGTGMVFSGVSEARRAYDNR 540
            R LMMS+NNILSPANGEPIIVP+QDVVLGLYYMTRE INAKG G VF+ + E  R +   
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG 540

Query: 541  AVELHAKVKVRLKLVHIAEDGTRSSETRLVETTVGRALLAEILPEGLPFELANTELTKKN 600
               LHAK+KVR+       DG+    TR+V+TTVGRALL +++P GLP+++ N  + KK 
Sbjct: 541  EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA 600

Query: 601  ISRLINSSYRLLGLKETVVFADKLMYTGYRFATRAGISIGIDDMLIPNEKKTILDEAEKE 660
            IS+LIN  YR++GLKETV+FAD+LMYTG+ ++T +G+SIG++D +IP+EK  I+  A  E
Sbjct: 601  ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGNATDE 660

Query: 661  VVEIQQQYQSGLVTAGERYNKVVDIWSRTSEQVAKAMIDGIGTEKVVDAEGKMVSQKSMN 720
            V EI+ QY SGLVT GE+YNKV+D+WS+ +++V+KAM+  +  EKV+D EGK V Q+S N
Sbjct: 661  VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN 720

Query: 721  SLYIMADSGARGSVAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGAR 780
            S+Y+MADSGARGS AQIRQLAGMRGLMA+PDGSIIETPI ANFREGL+VLQYF STHGAR
Sbjct: 721  SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTMDDCGTEDGVTMQPIVEGGDVVEPLRDRVL 840
            KGLADTALKTANSGYLTRRLVDVAQD+VVT  DCGT+ G+ M P +EGGDVVEPL +RVL
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLVMTPHIEGGDVVEPLGERVL 840

Query: 841  GRVVVEDVYAPGDDDRPIVTRDTLLNEALVEKLDKAGVQIIKVRSPITCEAVHGVCKLCY 900
            GRV+  DV+ PG +D  IV   TL++E  VE ++   +  + VRSPI CE  +G+C  CY
Sbjct: 841  GRVIARDVFKPGTED-VIVPAGTLVDEQWVEFIELNSIDEVIVRSPINCETRYGICAKCY 899

Query: 901  GRDLARGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVTVKTTGSLK 960
            GRDLARGH VN+GEAVGV+AAQSIGEPGTQLTMRTFHIGGAASR +A D+V VK  G ++
Sbjct: 900  GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVR 959

Query: 961  FNNLKSVQHKQGHLVAVSRSGELSVIDASGRERERYKVPYGAVIAVKDGAPVKPGQTVAN 1020
             +NLK V+   G+LVAVSRSGEL++ D  GRERERYK+PYGAVI+VK+G  V+ G  VA 
Sbjct: 960  LHNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGEKVEAGAIVAK 1019

Query: 1021 WDPHTHPIVTEVAGVVRFIDFLDGVTVQSQTDELTGLESAVVTDPKRRGAQAKDLRPIVR 1080
            WDPHTHPIVTE+ G V F+   + +T++ QTDELTGL +  V D K R A  K++RP ++
Sbjct: 1020 WDPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIK 1079

Query: 1081 LEDAKGRELKLPGTDIAAQYFLPAGAIVSIQNGAEVGVGDVVARIPQETSKTRDITGGLP 1140
            + DA G++L LPGTD+ AQYFLPA A+V + +GA++GVGDV+ARIPQETSKTRDITGGLP
Sbjct: 1080 MVDAAGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLP 1139

Query: 1141 RVADLFEARKPKEPAILAERSGIISFGKDTKGKQRLIIKDVDGNE-HEELIPKWRQVIVF 1199
            RVADLFEAR+PKE +ILAE SG I+FGK+TKGK+RL+I   DG+E +EELIPKWR + VF
Sbjct: 1140 RVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSEPYEELIPKWRHLNVF 1199

Query: 1200 EGEHVEKGETVVDGEPSPHDILRLLGVEPLATYLVKEIQDVYRLQGVKINDKHIEAIIRQ 1259
            EGE V +GE + DG   PHDILRLLGV  LA Y+V EIQDVYRLQGVKINDKHIE I+RQ
Sbjct: 1200 EGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQ 1259

Query: 1260 MLRKVEIVEPGESHYLRGEQVERVRINGENERALAKGERPAEYQSVLLGITKASLATESF 1319
            MLRKVEI E G+S +++G+Q+E  ++  ENER  ++ +  +++  VLLGITKASL+TESF
Sbjct: 1260 MLRKVEISESGDSSFIKGDQMELTQVLVENERLASEDKFISKFTRVLLGITKASLSTESF 1319

Query: 1320 ISAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHASRRRQ 1372
            ISAASFQETTRVLTEAAV G RD LRGLKENV+VGRLIPAGTGLAYH+ R+R+
Sbjct: 1320 ISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRR 1372