Pairwise Alignments

Query, 1404 a.a., DNA-directed RNA polymerase subunit beta' from Rhodanobacter sp000427505 FW510-R12

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' (NCBI) from Escherichia coli BW25113

 Score = 1974 bits (5113), Expect = 0.0
 Identities = 995/1404 (70%), Positives = 1157/1404 (82%), Gaps = 3/1404 (0%)

Query: 1    MKDLLNLFNQQRTTPDFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAA 60
            MKDLL     Q  T +FDAIKIALASP++IRSWS+GEVKKPETINYRTFKPERDGLFCA 
Sbjct: 1    MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSL 120
            IFGPVKDYECLCGKYKR+KHRGV+CEKCG EVT  KVRRERMGHIELASPTAHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120

Query: 121  PSRIGLMLDMTLRDIERILYFEAFVVIDPGMTALERGQLLSEDQYLEATEEHGDEFDARM 180
            PSRIGL+LDM LRDIER+LYFE++VVI+ GMT LER Q+L+E+QYL+A EE GDEFDA+M
Sbjct: 121  PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180

Query: 181  GAEAVFHLLKSLDLPGEVIRLKEEIASTNSETKLKRLTKRVKLIEAFLESGNKPEWMVLT 240
            GAEA+  LLKS+DL  E  +L+EE+  TNSETK K+LTKR+KL+EAF++SGNKPEWM+LT
Sbjct: 181  GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL+L APDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT 360
            E+VDALLDNGRRGRAITG+NKR LKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 361  LRLHQCGLPKKMALELFKPFIFAKLQARGEATTIKAAKKLVEREEGQVWDILEEVIREHP 420
            LRLHQCGLPKKMALELFKPFI+ KL+ RG ATTIKAAKK+VEREE  VWDIL+EVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA 480
            VLLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVC A+NADFDGDQMAVHVPL++EAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RTLMMSSNNILSPANGEPIIVPTQDVVLGLYYMTRELINAKGTGMVFSGVSEARRAYDNR 540
            R LMMS+NNILSPANGEPIIVP+QDVVLGLYYMTR+ +NAKG GMV +G  EA R Y + 
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG 540

Query: 541  AVELHAKVKVRLKLVHIAEDGTRSSETRLVETTVGRALLAEILPEGLPFELANTELTKKN 600
               LHA+VKVR+       +G   ++T L +TTVGRA+L  I+P+GLP+ + N  L KK 
Sbjct: 541  LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA 600

Query: 601  ISRLINSSYRLLGLKETVVFADKLMYTGYRFATRAGISIGIDDMLIPNEKKTILDEAEKE 660
            IS+++N+ YR+LGLK TV+FAD++MYTG+ +A R+G S+GIDDM+IP +K  I+ EAE E
Sbjct: 601  ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE 660

Query: 661  VVEIQQQYQSGLVTAGERYNKVVDIWSRTSEQVAKAMIDGIGTEKVVDAEGKMVSQKSMN 720
            V EIQ+Q+QSGLVTAGERYNKV+DIW+  +++V+KAM+D + TE V++ +G+   Q S N
Sbjct: 661  VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN 720

Query: 721  SLYIMADSGARGSVAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGAR 780
            S+Y+MADSGARGS AQIRQLAGMRGLMA+PDGSIIETPI ANFREGLNVLQYF STHGAR
Sbjct: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTMDDCGTEDGVTMQPIVEGGDVVEPLRDRVL 840
            KGLADTALKTANSGYLTRRLVDVAQD+VVT DDCGT +G+ M P++EGGDV EPLRDRVL
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840

Query: 841  GRVVVEDVYAPGDDDRPIVTRDTLLNEALVEKLDKAGVQIIKVRSPITCEAVHGVCKLCY 900
            GRV  EDV  PG  D  +V R+TLL+E   + L++  V  +KVRS ++C+   GVC  CY
Sbjct: 841  GRVTAEDVLKPGTAD-ILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCY 899

Query: 901  GRDLARGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVTVKTTGSLK 960
            GRDLARGH++N GEA+GV+AAQSIGEPGTQLTMRTFHIGGAASRAAA  ++ VK  GS+K
Sbjct: 900  GRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIK 959

Query: 961  FNNLKSVQHKQGHLVAVSRSGELSVIDASGRERERYKVPYGAVIAVKDGAPVKPGQTVAN 1020
             +N+KSV +  G LV  SR+ EL +ID  GR +E YKVPYGAV+A  DG  V  G+TVAN
Sbjct: 960  LSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 1019

Query: 1021 WDPHTHPIVTEVAGVVRFIDFLDGVTVQSQTDELTGLESAVVTDPKRRGAQAKDLRPIVR 1080
            WDPHT P++TEV+G VRF D +DG T+  QTDELTGL S VV D   R A  KDLRP ++
Sbjct: 1020 WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALK 1079

Query: 1081 LEDAKGRELKLPGTDIAAQYFLPAGAIVSIQNGAEVGVGDVVARIPQETSKTRDITGGLP 1140
            + DA+G ++ +PGTD+ AQYFLP  AIV +++G ++  GD +ARIPQE+  T+DITGGLP
Sbjct: 1080 IVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLP 1139

Query: 1141 RVADLFEARKPKEPAILAERSGIISFGKDTKGKQRLIIKDVDGNE-HEELIPKWRQVIVF 1199
            RVADLFEAR+PKEPAILAE SGI+SFGK+TKGK+RL+I  VDG++ +EE+IPKWRQ+ VF
Sbjct: 1140 RVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVF 1199

Query: 1200 EGEHVEKGETVVDGEPSPHDILRLLGVEPLATYLVKEIQDVYRLQGVKINDKHIEAIIRQ 1259
            EGE VE+G+ + DG  +PHDILRL GV  +  Y+V E+QDVYRLQGVKINDKHIE I+RQ
Sbjct: 1200 EGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQ 1259

Query: 1260 MLRKVEIVEPGESHYLRGEQVERVRINGENERALAKGERPAEYQSVLLGITKASLATESF 1319
            MLRK  IV  G S +L GEQVE  R+   N    A G+  A Y   LLGITKASLATESF
Sbjct: 1260 MLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF 1319

Query: 1320 ISAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHASR-RRQGGLTAT 1378
            ISAASFQETTRVLTEAAV G RD LRGLKENVIVGRLIPAGTG AYH  R RR+    A 
Sbjct: 1320 ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAP 1379

Query: 1379 ELETLSGSTPAVSFAEAPAGGANG 1402
                ++    + S AE    G  G
Sbjct: 1380 AAPQVTAEDASASLAELLNAGLGG 1403