Pairwise Alignments

Query, 1404 a.a., DNA-directed RNA polymerase subunit beta' from Rhodanobacter sp000427505 FW510-R12

Subject, 1407 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Enterobacter asburiae PDN3

 Score = 1968 bits (5098), Expect = 0.0
 Identities = 996/1404 (70%), Positives = 1152/1404 (82%), Gaps = 3/1404 (0%)

Query: 1    MKDLLNLFNQQRTTPDFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAA 60
            MKDLL     Q  T +FDAIKIALASP++IRSWS+GEVKKPETINYRTFKPERDGLFCA 
Sbjct: 1    MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSL 120
            IFGPVKDYECLCGKYKR+KHRGV+CEKCG EVT  KVRRERMGHIELASPTAHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120

Query: 121  PSRIGLMLDMTLRDIERILYFEAFVVIDPGMTALERGQLLSEDQYLEATEEHGDEFDARM 180
            PSRIGL+LDM LRDIER+LYFE++VVI+ GMT LER Q+L+E+QYL+A EE GDEFDA+M
Sbjct: 121  PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERHQILTEEQYLDALEEFGDEFDAKM 180

Query: 181  GAEAVFHLLKSLDLPGEVIRLKEEIASTNSETKLKRLTKRVKLIEAFLESGNKPEWMVLT 240
            GAEA+  LLKS+DL  E  +L+EE+  TNSETK K+LTKR+KL+EAF++SGNKPEWM+LT
Sbjct: 181  GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL+L APDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT 360
            E+VDALLDNGRRGRAITG+NKR LKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 361  LRLHQCGLPKKMALELFKPFIFAKLQARGEATTIKAAKKLVEREEGQVWDILEEVIREHP 420
            LRLHQCGLPKKMALELFKPFI+ KL+ RG ATTIKAAKK+VEREE  VWDIL+EVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA 480
            VLLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVC A+NADFDGDQMAVHVPL++EAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RTLMMSSNNILSPANGEPIIVPTQDVVLGLYYMTRELINAKGTGMVFSGVSEARRAYDNR 540
            R LMMS+NNILSPANGEPIIVP+QDVVLGLYYMTR+ +NAKG GMV +G  EA R Y   
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG 540

Query: 541  AVELHAKVKVRLKLVHIAEDGTRSSETRLVETTVGRALLAEILPEGLPFELANTELTKKN 600
               LHA+VKVR+      E+G   ++T L +TTVGRA+L  I+P+GLPF + N  L KK 
Sbjct: 541  LASLHARVKVRITEYEKDENGEFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA 600

Query: 601  ISRLINSSYRLLGLKETVVFADKLMYTGYRFATRAGISIGIDDMLIPNEKKTILDEAEKE 660
            IS+++N+ YR+LGLK TV+FAD+ MYTG+ +A R+G S+GIDDM+IP +K  I+ EAE E
Sbjct: 601  ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE 660

Query: 661  VVEIQQQYQSGLVTAGERYNKVVDIWSRTSEQVAKAMIDGIGTEKVVDAEGKMVSQKSMN 720
            V EIQ+Q+QSGLVTAGERYNKV+DIW+  +++V+KAM+D + TE V++ +G    Q S N
Sbjct: 661  VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN 720

Query: 721  SLYIMADSGARGSVAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGAR 780
            S+Y+MADSGARGS AQIRQLAGMRGLMA+PDGSIIETPI ANFREGLNVLQYF STHGAR
Sbjct: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTMDDCGTEDGVTMQPIVEGGDVVEPLRDRVL 840
            KGLADTALKTANSGYLTRRLVDVAQD+VVT DDCGT +G+TM P++EGGDV EPLRDRVL
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL 840

Query: 841  GRVVVEDVYAPGDDDRPIVTRDTLLNEALVEKLDKAGVQIIKVRSPITCEAVHGVCKLCY 900
            GRV  ED+  PG  D  +V R+TLL+E   + L+   V  +KVRS ++C+   GVC  CY
Sbjct: 841  GRVTAEDILKPGTAD-ILVPRNTLLHEHWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCY 899

Query: 901  GRDLARGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVTVKTTGSLK 960
            GRDLARGH++N GEA+GV+AAQSIGEPGTQLTMRTFHIGGAASRAAA  ++ VK  GS+K
Sbjct: 900  GRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIK 959

Query: 961  FNNLKSVQHKQGHLVAVSRSGELSVIDASGRERERYKVPYGAVIAVKDGAPVKPGQTVAN 1020
             +N KSV +  G LV  SR+ EL +ID  GR +E YKVPYGAV+A  DG  V  G+TVAN
Sbjct: 960  LSNAKSVVNSAGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVAN 1019

Query: 1021 WDPHTHPIVTEVAGVVRFIDFLDGVTVQSQTDELTGLESAVVTDPKRRGAQAKDLRPIVR 1080
            WDPHT P++TEV+G +RF D +DG T+  QTDELTGL S VV D   R    KDLRP ++
Sbjct: 1020 WDPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALK 1079

Query: 1081 LEDAKGRELKLPGTDIAAQYFLPAGAIVSIQNGAEVGVGDVVARIPQETSKTRDITGGLP 1140
            + DA+G ++ +PGTD+ AQYFLP  AIV +++G ++G GD +ARIPQE+S T+DITGGLP
Sbjct: 1080 IVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDALARIPQESSGTKDITGGLP 1139

Query: 1141 RVADLFEARKPKEPAILAERSGIISFGKDTKGKQRLIIKDVDGNE-HEELIPKWRQVIVF 1199
            RVADLFEAR+PKEPAILAE SGIISFGK+TKGK+RL+I  VDG+E +EE+IPKWRQ+ VF
Sbjct: 1140 RVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVF 1199

Query: 1200 EGEHVEKGETVVDGEPSPHDILRLLGVEPLATYLVKEIQDVYRLQGVKINDKHIEAIIRQ 1259
            EGE VE+G+ V DG  +PHDILRL GV  +  Y+  E+QDVYRLQGVKINDKHIE I+RQ
Sbjct: 1200 EGERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQ 1259

Query: 1260 MLRKVEIVEPGESHYLRGEQVERVRINGENERALAKGERPAEYQSVLLGITKASLATESF 1319
            MLRK  I   G S +L GEQVE  R+   N    A G+  A +   LLGITKASLATESF
Sbjct: 1260 MLRKATIENAGSSEFLEGEQVEYSRVKIANRDLEANGKIGATFSRDLLGITKASLATESF 1319

Query: 1320 ISAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHASR-RRQGGLTAT 1378
            ISAASFQETTRVLTEAAV G RD LRGLKENVIVGRLIPAGTG AYH  R RR+      
Sbjct: 1320 ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELP 1379

Query: 1379 ELETLSGSTPAVSFAEAPAGGANG 1402
                ++    + S AE    G  G
Sbjct: 1380 AAPQVTAEDASASLAELLNAGLGG 1403