Pairwise Alignments

Query, 288 a.a., RNA polymerase sigma factor RpoH from Rhodanobacter sp000427505 FW510-R12

Subject, 304 a.a., RNA polymerase sigma factor RpoH from Sphingobium sp. HT1-2

 Score =  199 bits (506), Expect = 6e-56
 Identities = 117/285 (41%), Positives = 176/285 (61%), Gaps = 18/285 (6%)

Query: 10  SNLPSVVG-----SLDAYISAVHRIPVLSQEEEQALSRDYLEEANLAAAKKLVMSHLRFV 64
           SN+P+V       SL+ Y+S + + P+L+ E+E  L++ Y E  +  AA +LV SHLR V
Sbjct: 5   SNVPAVPALGGEASLNRYLSEIRKFPLLTPEQEYMLAKRYEEHQDPEAAAQLVTSHLRLV 64

Query: 65  VHVARGYSGYGLQLADLIQEGNIGLMKAVKRFDPDQGVRLVSFAVHWIRAEMHEFILKNW 124
             +A GY GYGL +++LI EGNIGLM+ VK+F+ ++G RL ++A+ WIRA + EFIL++W
Sbjct: 65  AKIAMGYRGYGLPVSELISEGNIGLMQGVKKFEAERGFRLATYAMWWIRASIQEFILRSW 124

Query: 125 RIVKVATTKAQRKLFFNLRKSKKRL-----GWMNAAEVSTVAKDLGVPEATVREMESRLS 179
            +VK+ TT +Q+KLFFNLR+ K  +     G +   +V+ +A DLGV E  V  M  R++
Sbjct: 125 SLVKMGTTASQKKLFFNLRRMKNNIEAFEDGDLRPEDVTKIATDLGVSEDDVVSMNRRMA 184

Query: 180 -GRDIGFEAPVDADDDAKPAPAAFLVDDGADPYQN--VADEDYADNQMETLNDALAHLDP 236
            G D     P+  D D +     +L D   DP Q+  VA+E     + E L +A+  L+ 
Sbjct: 185 MGGDTSLNVPMREDGDGQWQD--WLQD--TDPLQDERVAEEQERTQRHEMLVEAMTDLND 240

Query: 237 RSRDIIQRRWLDDSSKATLQDLADEYGVSAERIRQIEANAMKKMR 281
           R + I+  R L +  K TL++L+  YGVS ER+RQIE  A +K++
Sbjct: 241 REKHILAERRLAEEPK-TLEELSQVYGVSRERVRQIEVRAFEKLQ 284