Pairwise Alignments

Query, 288 a.a., RNA polymerase sigma factor RpoH from Rhodanobacter sp000427505 FW510-R12

Subject, 335 a.a., RNA polymerase, sigma S (sigma 38) factor from Pseudomonas putida KT2440

 Score =  116 bits (291), Expect = 6e-31
 Identities = 82/272 (30%), Positives = 145/272 (53%), Gaps = 19/272 (6%)

Query: 18  SLDA---YISAVHRIPVLSQEEEQALSRDYLEEANLAAAKKLVMSHLRFVVHVARGYSGY 74
           +LDA   Y++ +   P+LS EEE   +R   ++ + A  K+++ S+LR VV +AR Y   
Sbjct: 60  ALDATQLYLNEIGFSPLLSPEEEVHFAR-LSQKGDPAGRKRMIESNLRLVVKIARRYVNR 118

Query: 75  GLQLADLIQEGNIGLMKAVKRFDPDQGVRLVSFAVHWIRAEMHEFILKNWRIVKVATTKA 134
           GL L DLI+EGN+GL++AV++FDP++G R  ++A  WIR  +   I+   R +++     
Sbjct: 119 GLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL-PIHV 177

Query: 135 QRKLFFNLRKSKKRLGWM-NAAEVSTVAKDLGVPEATVREM---ESRLSGRDIGFEAPVD 190
            ++L   LR +++    + +      +A  L  P A V+ M     R+S  D+       
Sbjct: 178 VKELNVYLRAARELTQKLDHEPSPEEIATLLEKPVAEVKRMLGLNERVSSVDVSL----- 232

Query: 191 ADDDAKPAPAAFLVDDGADPYQNVADEDYADNQMETLNDALAHLDPRSRDIIQRRW-LDD 249
             D  K        D   DP + + D+D +    ++++  L  L  + R+++ RR+ L  
Sbjct: 233 GPDSDKTLLDTLTDDRPTDPCELLQDDDLS----QSIDQWLGELTDKQREVVVRRFGLRG 288

Query: 250 SSKATLQDLADEYGVSAERIRQIEANAMKKMR 281
              +TL+D+  E G++ ER+RQI+   +K++R
Sbjct: 289 HESSTLEDVGLEIGLTRERVRQIQVEGLKRLR 320