Pairwise Alignments

Query, 288 a.a., RNA polymerase sigma factor RpoH from Rhodanobacter sp000427505 FW510-R12

Subject, 679 a.a., RNA polymerase sigma factor RpoD from Magnetospirillum magneticum AMB-1

 Score =  106 bits (265), Expect = 1e-27
 Identities = 80/262 (30%), Positives = 133/262 (50%), Gaps = 20/262 (7%)

Query: 23  ISAVHRIPVLSQEEEQALSRDYLEEANLAAAKKLVMSHLRFVVHVARGYSGYGLQLADLI 82
           IS   RI    Q  E+  SR         A K+++ ++LR V+ +A+ Y+  GLQ  DLI
Sbjct: 421 ISEYRRIVQTVQRGEREASR---------AKKEMIEANLRLVISIAKKYTNRGLQFLDLI 471

Query: 83  QEGNIGLMKAVKRFDPDQGVRLVSFAVHWIRAEMHEFILKNWRIVKVATTKAQ--RKLFF 140
           QEGNIGLMKAV +F+  +G +  ++A  WIR  +   I    R +++     +   KL  
Sbjct: 472 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVR 531

Query: 141 NLRKSKKRLGWMNAAEVSTVAKDLGVPEATVREMESRLSGRDIGFEAPVDADDDAKPAPA 200
             R+    +G     E   +A+ L +P   VR++  +++   I  E P+  ++D+     
Sbjct: 532 TSRQMLHEIGREPTPE--ELAEKLSMPLEKVRKV-LKIAKEPISLETPIGDEEDSHLGD- 587

Query: 201 AFLVDDGADPYQNVADEDYADNQMETLNDALAHLDPRSRDIIQRRW-LDDSSKATLQDLA 259
            F+ D  A       D     N  ET    LA L PR   +++ R+ +  ++  TL+++ 
Sbjct: 588 -FIEDKNA---VLPLDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVG 643

Query: 260 DEYGVSAERIRQIEANAMKKMR 281
            ++ V+ ERIRQIEA A++K++
Sbjct: 644 QQFSVTRERIRQIEAKALRKLK 665