Pairwise Alignments

Query, 1055 a.a., efflux RND transporter permease subunit from Rhodanobacter sp000427505 FW510-R12

Subject, 1032 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

 Score =  796 bits (2056), Expect = 0.0
 Identities = 446/1034 (43%), Positives = 658/1034 (63%), Gaps = 15/1034 (1%)

Query: 1    MNIFAPLIRRPVGTSLLALGLMLAGLWAYLLLGVAALPSLDFPGVYVVASQPGASAQTMA 60
            MN+    I RPV T+L  L ++LAGL AY LL V+ALP +D+P + V+   PGAS Q M 
Sbjct: 1    MNLSRLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMT 60

Query: 61   NTVLAPLERHLGRIPGVDEMYGNASEGQASVMVRFTFDRTADSAARDVQAAINAAAVDLP 120
            + V APLER  G++PG+++M   +S G + + +RF  D   D A + VQAAINAA+  LP
Sbjct: 61   SAVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNMDVAEQQVQAAINAASNLLP 120

Query: 121  TGMPSLPQYFKFDTSQIPILFLTLTSTGLPQDQLFDLADTMLKPAVAQIDGVAQVQVFGG 180
            + +P+ P Y K + +  P+L L ++S  +P  +L DL DT +   +AQI GV  V + GG
Sbjct: 121  SDLPAPPVYNKVNPADTPVLTLAISSKTMPLPKLNDLVDTRVAQKLAQISGVGMVSIAGG 180

Query: 181  TPHAVRIELDNGALAAKGLTTNDVANALRAANVTSPQGTLSDGHTQMTV-SASDSLQTPA 239
               AVRI+++  ALAA GL  +DV   + A+NV  P+G   DG T++++  A+D L++P 
Sbjct: 181  QRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNF-DGPTRVSMLDANDQLRSPE 239

Query: 240  EFARLLISVRNGTPVRLSDVAKVYSGQQDEYQAAWFNDARAVGLQISKRPEANAVATVEA 299
            E+A L+++  NG P+RL DVA++  G ++E  AAW N+  AV L I ++P AN +  V+ 
Sbjct: 240  EYANLILAYNNGAPLRLKDVAEIVDGAENERLAAWANENHAVLLNIQRQPGANVIEVVDR 299

Query: 300  IRARLPQLRASLPSSVTMTPVFDLTQTTKSALHEVQVALLISIAMVVLVMLVFLRRLRPT 359
            I+  LP +  +LP+ + ++ + D TQT ++A+ +VQ  LLI+I +VV+V  VFLRR   T
Sbjct: 300  IKGLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDVQHELLIAIVLVVMVTFVFLRRFSAT 359

Query: 360  LIATLSVPLSLAGAFVVMWTLGYTLNTLSLVALVLCIGFVVDDAIVVIENIVRHMERGEP 419
            LI +++VPLSL G F VM+  G+++N L+L+AL +  GFVVDDAIV++ENI RH+E GE 
Sbjct: 360  LIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENISRHIEEGET 419

Query: 420  PMEAALAGVREIGFTVVSITLSLVAVFAPLLFGNNILIMLLREFSVTLTAAVVISALVSL 479
            PM+AAL G R+IGFT++S+T SL+AV  PLLF  +++  L REF++TL  A++IS +VSL
Sbjct: 420  PMQAALKGARQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSL 479

Query: 480  TLTPALCAWLLSHEPEHTRQPGRIEQAVERFDRRLLHIYERALDWAMHHRRIMRWQPLTL 539
            TLTP +CA LL  EP+   Q GR  +A   +   L+  Y  AL W + H+ +     +  
Sbjct: 480  TLTPMMCARLLKREPKEEEQ-GRFYRASGAWIDWLIQHYGSALQWVLKHQPLTLLVAVAS 538

Query: 540  LILTFVLGFAVAKTAGGTFMPDEDTGQLQVDISADANISPAELTARALAVAKIMQADPAV 599
            L+LT  L   V K     F P +DTG +Q    A  + S A ++ R  A++K++  DPAV
Sbjct: 539  LVLTVFLYMVVPK----GFFPVQDTGVIQGISEAPQSTSFAAMSERQQALSKVILQDPAV 594

Query: 600  LDQLTMLGRDGGGGGAVGNNAQMFVDLKPRGSGPGERREGIKQVVERLSKQYDKLANVKV 659
                + +G D  G  A  N+ ++ ++LKP     GER     +V+ RL  Q D+L  +++
Sbjct: 595  QSLSSYIGVD--GDNATLNSGRLLINLKPH----GERDVSASEVISRLQPQVDRLVGIRL 648

Query: 660  SVSAAQFLGGGGSGDKGGQYEFQLVSTNGGDLQPWALRMVRQLRAMKEFRDVSSNFDQVG 719
             +   Q L       +  QY+F L S +   L  W+ ++V+ L+   E  DV+S+    G
Sbjct: 649  FMQPVQDLSIEDRVSR-TQYQFSLSSPDADLLAQWSGKLVQALQQRPELADVASDLQDKG 707

Query: 720  KQQLLKIDREAAARLHVGVGTIDSALYNAFGQRQVSQIYSDINQYAVVLSTGAAERVSPE 779
             Q  L IDR+ A+RL + V  I +ALY+AFGQRQ+S IY+  +QY VVL +  A  + P+
Sbjct: 708  LQVYLVIDRDMASRLGISVSQITNALYDAFGQRQISTIYTQASQYRVVLQSSDAATIGPQ 767

Query: 780  SLLDVRVRNEQGRMIPLSALATIAPNLSPLRIRHHNQLEAATISYNLAKDVTQDVGVKLV 839
            +L  + V+   G  + LSALA I    + L I H  Q  A T+S+NLA   +    V+++
Sbjct: 768  ALESIHVKATDGGQVRLSALARIEQRQAQLAISHIGQFPAVTLSFNLAHGASLGEAVQVI 827

Query: 840  EQAAYAARLPAGMRVDFTGANQRLKQAQSNGMVLLLGSILAMYIVLGILYESLGHPLTIL 899
            EQ      +P G++  F GA +  + + S+ ++L+L +++ MYIVLG+LYES  HP+TIL
Sbjct: 828  EQVQKDIGMPLGVQTRFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYESYIHPITIL 887

Query: 900  STLPAAGAGAFLAMLVTQTQISLMAIIAVLMLIGIVKKNAILMVDFALVAERERGLPAPE 959
            STLP+A  GA LA+L++   + ++AII +++LIGIVKKNAI+M+DFAL AER +G+   +
Sbjct: 888  STLPSAAVGALLALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALEAERNQGMSPRD 947

Query: 960  AIREAALVRFRPITMTTLVAMGAALPLAIGFGIGSEMRQPLGIAIVGGLLVSQLLTLLST 1019
            AI +AAL+RFRPI MTTL A+  A+PL +  G G+E+RQPLG+ +VGGLLVSQ+LTL +T
Sbjct: 948  AIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVLTLFTT 1007

Query: 1020 PAIYLWNHDRKIRK 1033
            P IYL+  DR  R+
Sbjct: 1008 PVIYLY-FDRLARR 1020