Pairwise Alignments

Query, 234 a.a., RNA polymerase sigma factor from Rhodanobacter sp000427505 FW510-R12

Subject, 190 a.a., RNA polymerase sigma factor cnrH from Sphingobium sp. HT1-2

 Score = 92.8 bits (229), Expect = 4e-24
 Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 6/186 (3%)

Query: 10  VDVAALDDHALVALVRDGHREAFRHIMQRCNQRLFRVARAVLGEDSEAEDVLQESYMRAY 69
           +D+ A  D  L AL   G + AF  IM+R    +FR+ R ++G   EA D+ Q+ ++ A+
Sbjct: 3   LDLQACSDGELAALTLAGRQSAFAEIMRRHQTAIFRLVRGLVGNAEEALDLTQDCFVSAF 62

Query: 70  HKLDSFRGDSTLLTWLTSIVLNEARGRLRKRHTMVDLEQVDAAVDDTHQVIQFPSKFGSE 129
             L  + G   L  WL+ I +N+ R   R+R  +  L    +A  D  ++ Q P    S 
Sbjct: 63  SHLRKYDGARPLRAWLSRIAINKCRD-WRRRQRVRQLFTFGSAPSD-DEIEQVPDDAPS- 119

Query: 130 DPAVAAARSQIR-HLLEHAIDDLPPAFRTVYMMREVEECSVEETAHLLAIKPETVKTRLY 188
             A A+A S+I    L  AI  LP   R V M+R VE  S  E A  L++  + V+TRLY
Sbjct: 120 --AHASAESKIEVERLSAAISALPATLREVLMLRTVEGLSQSEAAKALSVSSKAVETRLY 177

Query: 189 RARRLL 194
           RAR  L
Sbjct: 178 RARARL 183