Pairwise Alignments

Query, 612 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens GW456-L13

Subject, 634 a.a., Acetoin dehydrogenase operon transcriptional activator AcoR from Xanthobacter sp. DMC5

 Score =  273 bits (698), Expect = 2e-77
 Identities = 208/632 (32%), Positives = 318/632 (50%), Gaps = 60/632 (9%)

Query: 14  IQDSWSRCRAFGLSHQSTPAFDPLPAAGIAQLLESQH--SLVQTTHQEVLPYYENILSNS 71
           +  SW R R   ++     A    P    A+L   +H  + + T  +  +    ++LS++
Sbjct: 27  VMASWQRSRLHLIAADRAAA----PLVSEAELFRRRHQNNRLVTAARPAMEEARHLLSDA 82

Query: 72  NCLIMLADHQGQVLTSWGTQRFIEPKLARGFSAGASWMERCTGTNAIGTALACEQAVHIE 131
           + +++L+D  G +L + G  R ++         G  W E   GTNAIGTALAC + V I 
Sbjct: 83  HSMLILSDPDGTILEAEGDARALDTGQEVKLQQGGLWCEAEIGTNAIGTALACGRPVQIH 142

Query: 132 HDEHFLKANRFMTGSAAPI-FDTERKVIAVLDVS--SDSYLPPS--HTLGMVKMMSQTVE 186
             EHF    +  T +AAP+    +R++I  +D+S  +D++ P +  H + +   +   + 
Sbjct: 143 AAEHFCAPVQRWTCAAAPVRHPLDREIIGAVDISGSTDTFNPQNLAHAVALAHQIEAVLG 202

Query: 187 NRLILNLFHGQ---HFQLTFNTGLNN--LDSQWAGLLIFDETGQVLSANRRADNLLG--- 238
            R+ +   H Q   HF    +  L    L    +G LI+     +  A RR+D L+    
Sbjct: 203 RRMEME--HEQVLRHFLSKRSLWLTEEILAFGRSGALIYSTDRALKEAARRSDRLISDGR 260

Query: 239 -ISLSRVSVESLFKVSLLELLNQPEGLPFSLQASGRNRFQCLL----KRPKQVPIQPRVF 293
             +L  V+ ++ +   + +LL  P      ++  G      ++    +RPK  P      
Sbjct: 261 LTALKDVTPDA-WAARIAQLL--PGASVEIVREEGEEIGGVVVLHAARRPKPAPRD---- 313

Query: 294 AEPAVTAPTPAAISLNTLHFGDIRVEKAVRQ-----AERLLEKDIPLLIHGETGVGKEVF 348
                T+       L  L F  I  E A+ Q     A R+ E  +P+L+ GETGVGKEVF
Sbjct: 314 -----TSQRDPGRELEPLAFDAIIGESAIMQEVKAKARRMAESGLPILLEGETGVGKEVF 368

Query: 349 VKALHQASSRSKQAFIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTL 408
            +A+H A + +   F+ +NC  +P +L+ SELFGYEKGAFTGA+  G  G +  AD G L
Sbjct: 369 ARAIHGARAPAGP-FVPLNCGGLPRDLIASELFGYEKGAFTGADTSGKQGKVEAADGGLL 427

Query: 409 FLDEIGDMPLPTQARLLRVLQERCVQPVGSSELFPVDLRIISATNRSLREQVQLGRFRED 468
            LDEIG+MPL  Q+ LLRVL++  V  VG      VDLR++S TNR L  +V  GRFR+D
Sbjct: 428 CLDEIGEMPLELQSYLLRVLEDGVVYRVGGHTGRRVDLRLVSMTNRDLTGEVAAGRFRKD 487

Query: 469 LYYRIGGLTLELPPLRERSDKEALFKRLWEQHREPSQWAGL-----SREVLELFERHPWP 523
           L+YRI  L L +PPLRER +   L   L    R  +  AGL     +         + WP
Sbjct: 488 LFYRIAALRLRIPPLRERGEDVLLL--LDHIGRSAAARAGLPAPRFTEAARAALAAYSWP 545

Query: 524 GNLRQVSSVMQVALAM-AEEQPIRPEHLPDDFFVDLEMEPVETPEPLTVDLNDVED--LN 580
           GN+R++ +V+++ +AM + + PI    LP       E+       P   DL  VE+  + 
Sbjct: 546 GNVRELRNVVEMLIAMGSADAPIDGSDLPP------EIATAAAAAPAATDLRTVEEAAIR 599

Query: 581 RQLQAAGGNISYLARRLGVSRNTLYKRLRQTE 612
             ++A GGN++  ARRLG++R+TLY RL   E
Sbjct: 600 AAVEACGGNLTRAARRLGIARSTLYMRLAALE 631