Pairwise Alignments

Query, 612 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens GW456-L13

Subject, 710 a.a., sigma-54-dependent Fis family transcriptional regulator from Variovorax sp. OAS795

 Score =  402 bits (1032), Expect = e-116
 Identities = 257/692 (37%), Positives = 374/692 (54%), Gaps = 93/692 (13%)

Query: 3   APASPLSHDAIIQDSW-SRCRAFGLSHQSTPAFDPLPAAGIAQLLESQHSLVQTTHQEVL 61
           A A P +    + + W  RC A GLS    P F+P+  + +    E    L   TH    
Sbjct: 22  AVAPPRADRTELIEQWHQRCAALGLSRVERPDFEPMRRSDLVVARERNQRLF--TH--AA 77

Query: 62  PYYENILS---NSNCLIMLADHQGQVLTSWGTQRFIEPKLARGFSAGASWMERCTGTNAI 118
           P  E +L    N++ +I+LAD  G +L S G  RF++       + G SW E   GTNAI
Sbjct: 78  PVMEMLLEQIVNTDSMIVLADTTGTILHSVGDDRFLQRANKVALTPGVSWAEHSKGTNAI 137

Query: 119 GTALACEQAVHIEHDEHFLKANRFMTGSAAPIFDTERKVIAVLDVSSDSYLPPSHTLGMV 178
           GT L  E    +   EHF+ AN F+T SAAPIFD   +++ VLDV+ D      HT+G+V
Sbjct: 138 GTTLVEETPTVVHGGEHFIHANNFLTCSAAPIFDPRGEMLGVLDVTGDQRSYHQHTMGLV 197

Query: 179 KMMSQTVENRLILNLFHGQHFQLTFNTGLNNLDSQWAGLLIFDETGQVLSANRRADNLLG 238
           +M ++ +EN+ + + + G   +L F+     + +   G+++    G++L ANR A + L 
Sbjct: 198 RMSARMIENQWLSDDY-GNRLRLHFHGRAEFIGTLLEGIIVVGADGKILGANRSALDQLD 256

Query: 239 ISLSRVSVESLFKV------SLLELLNQPEGLPFSLQASGRNRFQC-----------LLK 281
           +S++ V ++SL  +      ++ +    P   P  L A     F             +L 
Sbjct: 257 MSIAAVRMQSLASLFGITASAVFDHFRSPLPAPMMLHAVSGQLFHVSARFNGPQRSVVLD 316

Query: 282 RPKQVPIQPRVFAEPAV---------------TAPTPAAISLNTLHF---GDIRVEKAVR 323
            P    ++PR+  EP                   P+P A  L+ LH+   GD ++   + 
Sbjct: 317 MPVS-SVEPRMPEEPNARPSSAARGDEAAARQAGPSPHA-PLSGLHYLDTGDAQIAATLL 374

Query: 324 QAERLLEKDIPLLIHGETGVGKEVFVKALHQASSRSKQAFIAVNCAAIPAELVESELFGY 383
           +  R++ +DIPLL+ GETG GKE+  +A+HQ S+R++Q F+AVNCA+IP  L+E+ELFGY
Sbjct: 375 KVRRVINRDIPLLVLGETGTGKELLARAVHQDSNRARQPFVAVNCASIPESLIEAELFGY 434

Query: 384 EKGAFTGANQKGSIGLIRKADKGTLFLDEIGDMPLPTQARLLRVLQERCVQPVGSSELFP 443
           E+GAFTGA +KG++G I +A  GTLFLDEIGDMPL  QARLLRVLQER V P+GS +  P
Sbjct: 435 EEGAFTGARRKGAVGRIVQAHGGTLFLDEIGDMPLSLQARLLRVLQERNVTPLGSLKSIP 494

Query: 444 VDLRIISATNRSLREQVQLGRFREDLYYRIGGLTLELPPLRERSDKEALFKRLWEQHREP 503
           VD+ +I AT+R+LRE +  G FREDLYYR+ GL ++LPPLRERSD + + +R+      P
Sbjct: 495 VDIAVIGATHRNLREMIAAGTFREDLYYRLNGLVVKLPPLRERSDLDVVARRILLAEC-P 553

Query: 504 SQWAGLSREVLELFERHPWPGNLRQVSSVMQVALAM-AEEQPIRPEHLPDDFFVDL---- 558
                ++  VL LF+ + WPGNLRQ+++V++ A  M A E+ I   HL DDF  D     
Sbjct: 554 QDTPEIAPAVLALFKAYAWPGNLRQLANVLRTAAVMSAGERHICEHHLSDDFLEDARRVL 613

Query: 559 ----------------------------------------EMEPVETPE-PLTVDLNDVE 577
                                                   E  PV  PE P T+   +++
Sbjct: 614 SQAAPGAAAPAPSAPQAAALPQAAHAAAPPEHTMPPLRDSESLPVAAPEAPRTLGEAEID 673

Query: 578 DLNRQLQAAGGNISYLARRLGVSRNTLYKRLR 609
            +   L AA GNIS  ++RLG+SRNT+Y++LR
Sbjct: 674 MIRSALAAADGNISVASKRLGISRNTIYRKLR 705