Pairwise Alignments

Query, 612 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens GW456-L13

Subject, 622 a.a., Acetoin catabolism regulatory protein from Pseudomonas sp. RS175

 Score =  285 bits (730), Expect = 3e-81
 Identities = 209/609 (34%), Positives = 302/609 (49%), Gaps = 39/609 (6%)

Query: 13  IIQDSWSRC-RAFGLSHQSTPAFDPLPAAGIAQLLESQHSLVQTTHQEVLPYYENILSNS 71
           +I DSW R      L   S      L    + Q  E     +    +EV   +  +    
Sbjct: 31  LILDSWRRSMEQHHLDPGSLQGPRILSEDVLRQCRERSELFLNIASEEVTRLHGRVRDAD 90

Query: 72  NCLIMLADHQGQVLTSWGTQRFIEPKLARGFSAGASWMERCTGTNAIGTALACEQAVHIE 131
            C ++L D QGQ +               G   G  W E   GT  +   L     V + 
Sbjct: 91  YC-VLLTDAQGQTIDYRVETTIRNDCRKAGLYLGTCWSEGEEGTCGVAAVLTARAPVTVH 149

Query: 132 HDEHFLKANRFMTGSAAPIFDTERKVIAVLDVSSDSYLPPSHTLGMVKMM----SQTVEN 187
             +HF  A   +T SAAP+FD + +++ VLDVS+        +  +++ M    ++ +E 
Sbjct: 150 KRDHFRAAFIGLTCSAAPVFDPQGELLGVLDVSAVRSPDDRRSQHLIRQMVVQSAREIEQ 209

Query: 188 RLILNLFHGQHFQLTFNTGLNNLDSQWAGLLIFDETGQVLSANRRADNLLGISLSRVS-- 245
              ++   G ++ L  +     +DSQ   L  +D+ G + + N  A   L     ++   
Sbjct: 210 AFFMSSAQG-YWVLRAHHNAGYVDSQPDFLFAWDDDGCLQALNPAARQYLLQHYGQLPQH 268

Query: 246 VESLFKVSLLELLNQPEGLPFSLQASGRNRFQCLLKRPKQVPIQPRVFAEPAVTAPTPAA 305
           +  +F    L         P      GR        R + VP +PRV   P+   P    
Sbjct: 269 ISQVFDQQQLHRARDESLYPLDHALHGR----LSAPRHRAVP-RPRVAMAPSELDP---- 319

Query: 306 ISLNTLHFGDIRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQASSRSKQAFIA 365
                      R+  ++R A R+ ++++P+LI GETG GKEVF + LHQAS R ++ F+A
Sbjct: 320 -----------RLADSLRLAVRVKDRNLPVLIQGETGSGKEVFARQLHQASQRRERPFVA 368

Query: 366 VNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEIGDMPLPTQARLL 425
           +NCAAIP  L+ESELFGY  GAFTGA+ +G  GL+ +AD GTLFLDEIGDMPL  Q RLL
Sbjct: 369 LNCAAIPESLIESELFGYVAGAFTGASARGMQGLLEQADGGTLFLDEIGDMPLALQTRLL 428

Query: 426 RVLQERCVQPVGSSELFPVDLRIISATNRSLREQVQLGRFREDLYYRIGGLTLELPPLRE 485
           RVL E  V P+G+S    VD+++I AT+R L   V  G FREDLY+R+GG   +LPPLRE
Sbjct: 429 RVLAEGEVAPLGASRRRAVDIQVICATHRDLETLVAAGEFREDLYFRLGGARFQLPPLRE 488

Query: 486 RSDKEALFKRLWEQHREPSQWAGLSREV----LELFERHPWPGNLRQVSSVMQVALAMAE 541
           R+D+ AL  R+ E+  E  + +GL +++    LE    + WPGN+RQ+  V++ A A+ E
Sbjct: 489 RTDRLALINRILEE--ESMRCSGLLQQLSGPALECLLGYHWPGNIRQLRHVLRYACAVCE 546

Query: 542 EQPIRPEHLPDDFFVDLEMEPVETPEPLTVDLNDVEDLNRQLQAAGGNISYLARRLGVSR 601
              I   HLP+       M   +TPEP  V     + L   L       +  AR LG+SR
Sbjct: 547 ASVILLSHLPESLQGPGAM--ADTPEP--VACAQRQALLDALVRHRWKPTAAARALGISR 602

Query: 602 NTLYKRLRQ 610
            TLY+R+ Q
Sbjct: 603 ATLYRRVHQ 611