Pairwise Alignments

Query, 612 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens GW456-L13

Subject, 635 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas fluorescens SBW25

 Score =  347 bits (890), Expect = e-100
 Identities = 248/626 (39%), Positives = 341/626 (54%), Gaps = 46/626 (7%)

Query: 9   SHDAIIQDSWSRCRAFGLSHQSTPAFDPLPAA-GIAQLLESQHSLVQTTH---QEVLPYY 64
           S D  I  SW RC      +   PA    P      +LLES+  L Q  H    E+   +
Sbjct: 23  SSDPSIARSWLRCLE---DYHLDPAQTIAPTVLEHGRLLESRERLQQVLHIAGSEMNSLH 79

Query: 65  ENILSNSNCLIMLADHQGQVL---TSWGTQRFIEPKLARGFSAGASWMERCTGTNAIGTA 121
           +  LS +   ++L D +G +L   T+   ++  E     G   GA W E C GTN IGT 
Sbjct: 80  QQ-LSGAGHAVLLTDARGVILNCVTAPSERKIFE---RAGLWLGADWSEACEGTNGIGTC 135

Query: 122 LACEQAVHIEHDEHFLKANRFMTGSAAPIFDTERKVIAVLDVSSD----SYLPPSHTLGM 177
           L   Q++ I  DEHF   +  +T SA+P+FD    ++AVLDVSS     S     HT+ +
Sbjct: 136 LVERQSLTIHRDEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSAREAVSRQSQFHTMAL 195

Query: 178 VKMMSQTVENRLILNLFHGQHFQLTFNTGLNNLDSQWAGLLIFDETGQVLSANRRADNLL 237
           V + ++ +E+   L  F   H+ L F+    ++     GLL FD  G++ + N+ A NLL
Sbjct: 196 VNLSAKMIESCYFLRHFE-HHWLLRFHLQAESVGLFSEGLLAFDGNGRICAVNQSALNLL 254

Query: 238 GI---SLSRVSVESLFKVSLLELL-----NQPEGLPFSLQASGRNRFQCLLKRPKQVPIQ 289
           G     L    VE+ F+ SL +LL     N     P   +  GR  F  L  + + VP  
Sbjct: 255 GQLRGGLLGQPVEAFFECSLDQLLGRASANATASWPLRTR-DGRPLFAALRGQARSVPAP 313

Query: 290 PRVFAEPAVTA-PTPAAISLNTLHFGDIRVEKAVRQAERLLEKDIPLLIHGETGVGKEVF 348
               A PAV   P    I L     GD  +++   +A R+ E+D+PLLI+GETG GKE F
Sbjct: 314 ---VARPAVVERPRLPGICL-----GDPALQRDFSKALRVFERDVPLLINGETGSGKEAF 365

Query: 349 VKALHQASSRSKQAFIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTL 408
            KA+HQAS R+ +AF+A+NCAAIP  L+ESELFGY  G+FTGA ++G  G +++AD GTL
Sbjct: 366 AKAVHQASQRADKAFVALNCAAIPESLIESELFGYRGGSFTGARKEGMQGKLQQADGGTL 425

Query: 409 FLDEIGDMPLPTQARLLRVLQERCVQPVGSSELFPVDLRIISATNRSLREQVQLGRFRED 468
           FLDEIGDMPL  Q RLLRVL++R V P+G  E   V++RIISAT+R+L E+VQ G FRED
Sbjct: 426 FLDEIGDMPLALQTRLLRVLEDRLVVPLG-GEPQAVNVRIISATHRNLLERVQDGSFRED 484

Query: 469 LYYRIGGLTLELPPLRERSDKEALFKRLWEQHREPSQWAGLSREVLELFERHPWPGNLRQ 528
           LYYR+ GL + LP LRERSDK  L   L  Q     +   L            WPGN+RQ
Sbjct: 485 LYYRLNGLEVGLPALRERSDKSQLLDFLLAQEAN-GEAVALDPAARMALLAFAWPGNVRQ 543

Query: 529 VSSVMQVALAMAEEQPIRPEHLPDDFFVDLEMEPVETPE--PLTVDLNDVEDLN--RQLQ 584
           + +V++  +A+ +E  +  E LP       +  PV   +  P    L D E L     LQ
Sbjct: 544 LRTVLRTLVALCDEGRVALEDLPAQI---RQARPVAAAQARPAESPLEDAERLALLTALQ 600

Query: 585 AAGGNISYLARRLGVSRNTLYKRLRQ 610
               ++++ A +LGVSRNTLY++LR+
Sbjct: 601 QQRWHMTHTAEQLGVSRNTLYRKLRR 626