Pairwise Alignments

Query, 612 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens GW456-L13

Subject, 671 a.a., Acetoin catabolism regulatory protein from Methylophilus sp. DMC18

 Score =  419 bits (1078), Expect = e-121
 Identities = 250/618 (40%), Positives = 361/618 (58%), Gaps = 35/618 (5%)

Query: 14  IQDSWSRCRAFGLSHQSTPAFDPLPAAGIAQLLESQHSLVQTTHQEVLPYYENILSNSNC 73
           I  SW RC   G+  Q+      + A  +AQ LE    L+     E++   E I +++  
Sbjct: 62  IARSWRRCMVKGVDEQAPAEDQIITAQELAQRLEKNRLLLAQAEPEMITLSEQI-AHTRS 120

Query: 74  LIMLADHQGQVLTSWGTQRFIEPKLARGFSAGASWMERCTGTNAIGTALACEQAVHIEHD 133
           L++L DH+G +L + G +   E ++      GASW E   GTNAIGTAL    A+ ++  
Sbjct: 121 LVILTDHEGVILRTMG-EGVDENQIRASLLPGASWSEEHRGTNAIGTALVERLAISVQGA 179

Query: 134 EHFLKANRFMTGSAAPIFDTERKVIAVLDVSSDSYLPPSHTLGMVKMMSQTVENRLILNL 193
           EHF+  +  ++ SA PIF     ++A LDVS+D   P  HTL +VKM +Q VENRL    
Sbjct: 180 EHFMAYHHSLSCSAVPIFAANNHLVATLDVSNDLNAPQQHTLALVKMAAQMVENRLFHAT 239

Query: 194 FHGQHFQLTFNTGLNNLDSQWAGLLIFDETGQVLSANRRADNLLGISLS-------RVSV 246
             G+   + F+     + + W G+ +FD  GQ+ + NR      G+ L        R++ 
Sbjct: 240 AEGE-IAVHFHVRPEFIGTLWEGVALFDAAGQLQTINRSGQFQFGLPLDQDSLSARRIAF 298

Query: 247 ESLFKVSLLEL----LNQPEGLPFSLQASGRNRFQCLLKRPKQVPIQPRVFAEPAVTAPT 302
           E +F  S +      LN     P  L+   R   +       Q P  P+        AP 
Sbjct: 299 EDIFDESWIAFKQRGLNTDVLFPLHLRNGARLYARA---SASQAPSAPKKMPP---LAPR 352

Query: 303 PAAISLNTLHFGDIRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQASSRSKQA 362
            +A SL  L  GD + + A+ Q +++L+KDIP+LI GETG GKE+F +A+H AS+R  + 
Sbjct: 353 ESAASLELLDSGDPQFKLAITQVKQVLDKDIPVLILGETGAGKELFSRAIHDASARRHKP 412

Query: 363 FIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEIGDMPLPTQA 422
           FIAVNCAA+P  L+E+ELFGYE+GA+TGA +KG++G I++AD GTLFLDEIGDMPL  QA
Sbjct: 413 FIAVNCAALPEGLIEAELFGYEEGAYTGAKRKGNLGKIQQADGGTLFLDEIGDMPLSLQA 472

Query: 423 RLLRVLQERCVQPVGSSELFPVDLRIISATNRSLREQVQLGRFREDLYYRIGGLTLELPP 482
           RLLRVLQER V P+G S+  PV+  ++SATN+ L+++V  G FR DLYYRI GL+++LP 
Sbjct: 473 RLLRVLQERSVTPLGGSKSIPVNFMLLSATNQKLKDKVAAGEFRSDLYYRINGLSVQLPA 532

Query: 483 LRERSDKEALFKRLWEQHREPSQWAGLSREVLELFERHPWPGNLRQVSSVMQVALAMAEE 542
           LRER D   L + + +  + P   A LS EV+ LF  HPWPGN+RQ+ +V++ A+A+A+ 
Sbjct: 533 LRERLDMARLIQVILQIEQAPQ--ASLSEEVMALFNAHPWPGNVRQLHNVLRTAVALADG 590

Query: 543 QPIRPEHLPDDFFVDLEMEPVETPEPLTVDL-----------NDVEDLNRQLQAAGGNIS 591
             I  +HL  DF  ++  +  +  EP  V +           ND E + + +   GGNIS
Sbjct: 591 GVIGRQHLMQDFLDEMLAKKADA-EPSAVGMAALPAASLKVQND-EAIRQAMLQHGGNIS 648

Query: 592 YLARRLGVSRNTLYKRLR 609
            ++R+LG+SRNTLY+RL+
Sbjct: 649 AVSRQLGLSRNTLYRRLK 666