Pairwise Alignments

Query, 612 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens GW456-L13

Subject, 627 a.a., transcriptional regulator from Agrobacterium fabrum C58

 Score =  285 bits (728), Expect = 5e-81
 Identities = 216/625 (34%), Positives = 299/625 (47%), Gaps = 51/625 (8%)

Query: 11  DAIIQDSWSRCRAFGLSHQSTPAFDPLPAAGIAQLLESQ--------HSLVQTTHQEVLP 62
           DA++ +SW RC         T   DP  A     + E++          L+      +  
Sbjct: 22  DAVVLESWRRCL-------DTYQLDPTKAREAVIVSETRLREHRQQAEDLLHIARSGLER 74

Query: 63  YYENILSNSNCLIMLADHQGQVLTSWGTQRFIEPKLARGFSAGASWMERCTGTNAIGTAL 122
            Y  + +  N +++L+D QG  +   G   F       G   G+ W E   GT A+G  +
Sbjct: 75  LYRQV-AEQNYVLLLSDRQGVTVEFLGDPSFNNNLRKAGLYLGSEWSEPRAGTCAVGACI 133

Query: 123 ACEQAVHIEHDEHFLKANRFMTGSAAPIFDTERKVIAVLDVS--SDSYLPPSHTLGMVKM 180
           A  +++ I   +HF   +  ++ +AAPI+DT+  + AVLD+S  S   L  S  +    +
Sbjct: 134 ATGESLTIHQTDHFDVTHTPLSCTAAPIYDTQGALTAVLDISLLSSPILKTSQNMAR-HL 192

Query: 181 MSQTVENRLILNLFHGQHFQLT--FNTGLNNLDSQWAGLLIFDETGQVLSANRRADNLLG 238
           +S TV    + NL       L   F      LD      L  D +G++      A  LL 
Sbjct: 193 VSSTVRRIELANLMASSRHDLVLRFAGAPEFLDVDPEAALSVDGSGRITGMTHAAARLLA 252

Query: 239 IS----------LSRVSVESLFKVSLLELLNQPEG-LPFSLQASGRNRFQCLLKRPKQVP 287
            S          L    VE  F+  L EL +     LP   +   R+    +L      P
Sbjct: 253 ASRGLDWRMPERLLGQRVEEFFEAGLDELASLTRSSLPQDRRIVVRDG--TVLYAHAIEP 310

Query: 288 IQPRVFAEPAVTAPTPAAISLNTLHFGD-IRVEKAVRQAERLLEKDIPLLIHGETGVGKE 346
            Q R     A + P P    +     GD   V    R+ E+L    +P+L+ G+TG GKE
Sbjct: 311 QQRRSSVPLARSKPQPVTERIG----GDGPAVRNLRRKVEKLSPARLPILLQGQTGTGKE 366

Query: 347 VFVKALHQASSRSKQAFIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKG 406
              + +H AS  S + F+AVNCAAIP +L+ESELFGY  GAFTGA  KG  GL+ +A  G
Sbjct: 367 HLARIIHDASGVSGR-FVAVNCAAIPEQLIESELFGYLPGAFTGALAKGRKGLVEEAQGG 425

Query: 407 TLFLDEIGDMPLPTQARLLRVLQERCVQPVGSSELFPVDLRIISATNRSLREQVQLGRFR 466
           TLFLDEIGDMP   Q+RLLRVL E  V PVG S    VD R+ISA++R L + V+ G FR
Sbjct: 426 TLFLDEIGDMPFAAQSRLLRVLAEGEVLPVGGSTPQKVDFRVISASHRPLNDMVRTGAFR 485

Query: 467 EDLYYRIGGLTLELPPLRERSDKEALFKRLWEQHREPSQWAGLSREVLELFERHPWPGNL 526
           EDLYYR+    L LP L ER D   L  R+ E+H  P +   LS         H WPGN+
Sbjct: 486 EDLYYRLNAAVLTLPALSERDDFPWLLDRILEKHGMPGRPLTLSNAARLTILHHRWPGNI 545

Query: 527 RQVSSVMQVALAMAEEQPIRPEHLPDDFFVDLEMEPVETPEPLTVDLND-VEDLNRQLQA 585
           R++ + +  A A+ ++  I  E LP+            TP   T  ++    DL   L A
Sbjct: 546 RELDNAIAFAAALCDDGLITVEDLPEQL----------TPASSTPMIDSRGTDLRALLAA 595

Query: 586 AGGNISYLARRLGVSRNTLYKRLRQ 610
             GNIS  ARRLGV R TL++R+R+
Sbjct: 596 CNGNISEAARRLGVDRTTLHRRMRR 620