Pairwise Alignments

Query, 907 a.a., DNA topoisomerase 1 from Xanthobacter sp. DMC5

Subject, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

 Score =  141 bits (355), Expect = 1e-37
 Identities = 166/627 (26%), Positives = 269/627 (42%), Gaps = 85/627 (13%)

Query: 13  MQVVIVESPAKAKTINK-----------YLGPGYEVIASYGHVRDLPSKDGSVD------ 55
           M++ + E P++AK I             +LG G  V    GH+ +    D   +      
Sbjct: 1   MRLYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDEKYKRWV 60

Query: 56  ----PDADFRMLWDVDPKAQKRLNEIAAAVKGADGLILATDPDREGEAISWHVLEVLRQK 111
               P    +    V PK   +   +   +  A  L++ATD DREGE I+  ++E  R +
Sbjct: 61  LADLPIVPEKWKMRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIARELVEHCRYR 120

Query: 112 KALKSQKVERVVFNAITKQAVLEAMKS--PRAIDSALVDAYLARRALDYLVGFTLS---P 166
                  ++R+  +A+   ++ +A+ +  P A   +L  + L R   D+L+G  +S    
Sbjct: 121 GP-----IQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFT 175

Query: 167 VLWRK--LPGARSAGRVQSVALRLVCDREREIETFVRKEYWSILAKLATPRNEEFEARLS 224
           +L R+    G    GRVQ+  LRLV DR+R I  FV   YW+I   L   R   F A+  
Sbjct: 176 LLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERIT-FTAQWR 234

Query: 225 GADGKKITRLSVGTAEEARAFREALDSAAF-RVRSVEAKPMKRHPQPPFTTSTLQQEASR 283
            A+     +      + AR   +A+ +AA  R+  +  + M+     PF   TLQ+  S+
Sbjct: 235 AAEDACDDQGRCLDPQLARDAADAMRNAATARLVKLRTERMREVAPLPFDLGTLQEICSK 294

Query: 284 KLGLAPARTMQIAQRLYEGVDVGGETVGLITYMRTD-------GVDMAPEAVAATRDAIG 336
           KLGL    T+ IAQ LY       ET  +ITY R+D           AP+ +AA   A  
Sbjct: 295 KLGLGAQETLDIAQSLY-------ETHKVITYPRSDCGYLPLSQHSEAPKILAALARADA 347

Query: 337 KQFGQKYLPGVPRKYTTKAKNAQE--AHEAIRPTDPSRHPRDVARYLDGEQAKLYELIWI 394
                + +P +  +  ++A N  +  AH  I PT      +DV + L G+   +Y LI  
Sbjct: 348 AV--NELMPHIETQRRSRAWNDAKVSAHHGIIPTGAG---KDVGQ-LTGKHRAVYTLIRA 401

Query: 395 RTVASQMESAELERTTADIEAKAGARTLDLTATGTVVKFDGFLTLYREGKDDEDDDE--E 452
           R +A  + + E +RT AD +    A    L A G VV   G+     E        E   
Sbjct: 402 RYLAQFLPNHEYDRTQADFDCAGQA----LRAVGKVVIEPGWKRALPEALAPAKGREAPA 457

Query: 453 GRRLPAMSANEALAKRDISTTQHFTEPPPRYSEASLVKRMEEL----------------- 495
            + LPA+   +  A   ++    +T+PP  ++E  L+K M+ +                 
Sbjct: 458 PQALPALVQGQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTT 517

Query: 496 GIGRPSTYAAVLAVLRDREYVKLDKKKLVPEDKGRLVTAFLESFFKRYVEYDFTADLEEK 555
           GIG  +T A ++  L DR Y+  + K L          + +++  +   +   TA  E+ 
Sbjct: 518 GIGTEATRAGIIQGLLDRGYLVKNGKAL---SATPAAFSLIDAVPRAIADPGTTAIWEQA 574

Query: 556 LDEVSAAELDWKEVL--RAFWQDFHAA 580
           LD V + E+  +E +  +A W     A
Sbjct: 575 LDMVQSGEMSLEEFVAKQAAWMSKQVA 601