Pairwise Alignments

Query, 907 a.a., DNA topoisomerase 1 from Xanthobacter sp. DMC5

Subject, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

 Score =  428 bits (1100), Expect = e-124
 Identities = 264/670 (39%), Positives = 368/670 (54%), Gaps = 91/670 (13%)

Query: 15  VVIVESPAKAKTINKYLGPGYEVIASYGHVRDLPSKDGS--------------------- 53
           +VIVESPAKAKTINKYLG  Y V +S GH+RDLP+   +                     
Sbjct: 5   LVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEAPALS 64

Query: 54  --------------VDPDADFRMLWDVDPKAQKRLNEIAAAVKGADGLILATDPDREGEA 99
                         VDPD  ++  +++ P  +K + E+    K AD + LATD DREGEA
Sbjct: 65  PKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDREGEA 124

Query: 100 ISWHVLEVLRQKKALKSQKVERVVFNAITKQAVLEAMKSPRAIDSALVDAYLARRALDYL 159
           I+WH    LR+       + +RVVFN ITK+A+ EA   P  +D   V+A  ARR LD +
Sbjct: 125 IAWH----LREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV 180

Query: 160 VGFTLSPVLWRKLPGARSAGRVQSVALRLVCDREREIETFVRKEYWSILAKLATPRNEEF 219
           VG+ +SP+LW K+    SAGRVQSVA++LV +REREI  F+ +EYW I A L T +N + 
Sbjct: 181 VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKV 240

Query: 220 EARLSGADGKKITRLSVGTAEEARAFREALDSAAFRVRSVEAKPMKRHPQPPFTTSTLQQ 279
              ++   G+    L+     +A A  E L ++++ V   E +P    P  PF TSTLQQ
Sbjct: 241 RFEVAREKGEAFKPLNEA---QAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQ 297

Query: 280 EASRKLGLAPARTMQIAQRLYEGVDVGGETVGLITYMRTDGVDMAPEAVAATRDAIGKQF 339
            AS +LG    +TM +AQRLYE         G ITYMRTD  +++ +A+   R  I ++F
Sbjct: 298 AASNRLGFGVKKTMMMAQRLYEA--------GYITYMRTDSTNLSADALDMARSYIEREF 349

Query: 340 GQKYLPGVPRKYTTKAKNAQEAHEAIRPTDPSRHPRDVARYLDGEQAKLYELIWIRTVAS 399
           G++YLP  P  Y +K + AQEAHEAIRP+D + HP  ++  ++ +  +LYELIW + +A 
Sbjct: 350 GKQYLPEAPLVYGSK-EGAQEAHEAIRPSDVNTHPTKLSG-MERDAERLYELIWRQFLAC 407

Query: 400 QMESAELERTTADIEAKAGARTLDLTATGTVVKFDGFL-TLYREGKDDEDDDEEGRRLPA 458
           QM  A+   T+  +     A   +L A G ++KFDG+   L ++ K  EDD      LP 
Sbjct: 408 QMPPAQYLSTSVTV----AAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDV-----LPE 458

Query: 459 MSANEALAKRDISTTQHFTEPPPRYSEASLVKRMEELGIGRPSTYAAVLAVLRDREYVKL 518
           M   EAL    I  +QHFT+PP R++EASLVK ME+ GIGRPSTYAA+++ ++DR YV L
Sbjct: 459 MVQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTL 518

Query: 519 DKKKLVPEDKGRLVTAFLESFFKRYVEYDFTADLEEKLDEVSAAELDWKEVLRAFWQDFH 578
             ++   E  G +VT  L   F   ++Y FTAD+EE LD+V+  E DWK VL  F+ DF 
Sbjct: 519 HNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFS 578

Query: 579 AAIEATKDLRVSQVLDALDEMLTAHIFPPREDG---TDPRL----CPTCGTGRLSLKMGK 631
             ++  +                       EDG     P +    C  CG   + ++   
Sbjct: 579 KKLQTAES---------------------SEDGMRANQPTMTNIPCKECGR-PMMIRTAS 616

Query: 632 FGAFIGCSNY 641
            G F+GCS Y
Sbjct: 617 TGVFLGCSGY 626



 Score = 38.1 bits (87), Expect = 2e-06
 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 617 CPTCGTGRLSLKMGKFGAFIGCSNYPECRHTRPL 650
           C  CG+  + LK G+FG F GC+N P C++TR L
Sbjct: 714 CDKCGS-EMQLKTGRFGKFFGCTN-PACKNTRKL 745