Pairwise Alignments

Query, 1394 a.a., DNA-directed RNA polymerase subunit beta' from Xanthobacter sp. DMC5

Subject, 1399 a.a., DNA-directed RNA polymerase subunit beta' from Pseudomonas putida KT2440

 Score = 1640 bits (4248), Expect = 0.0
 Identities = 842/1367 (61%), Positives = 1045/1367 (76%), Gaps = 20/1367 (1%)

Query: 3    QEILNVFNPTVPAPSFNQIRISIASPEKIKSWSYGEIKKPETINYRTFKPERDGLFCARI 62
            +++LN+         F+ IRI +ASPE I+SWS+GE+KKPETINYRTFKPERDGLFCA+I
Sbjct: 2    KDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAKI 61

Query: 63   FGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLP 122
            FGP+KDYECLCGKYKR+K++G+ICEKCGVEV L++VRRERM HIELA+PVAHIWFLKSLP
Sbjct: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSLP 121

Query: 123  SRIGLLLDMTLKDLERILYFEYFVVIEPGITKLKYRQLLSEDDYLRAQDEYGESSFTAMI 182
            SRIGLL+DMTL+D+ER+LYFE +VVI+PG+T L+  QLL+++ Y  A +E+G+  F A +
Sbjct: 122  SRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDD-FDARM 180

Query: 183  GAEAIRELLRSMDLEKIAADLRQEIAEATTELKPKKLAKRLKIVEAFQLSGNKPEWMILT 242
            GAEA+RELL ++DLE     LR+EI +  +E K KKL+KRLK++EAFQ SGN PEWM+LT
Sbjct: 181  GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT 240

Query: 243  HVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQ 302
             +PV+PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L APDII+RNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ 300

Query: 303  EAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE 362
            EAVDAL DNGRRGR ITG+NKRPLKSLADM+KGKQGRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360

Query: 363  LKLHQCGLPKKMALELFKPFIYSRLDAKGHSATVKQAKKLVEKERPEVWDILDEVIREHP 422
            L+LHQCGLPKKMALELFKPFI+ +L+ +G + T+K AKK+VE+E PEVWD+L EVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP 420

Query: 423  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEA 482
            V+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC+A+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 483  RVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIMKEKEPGEGMMFANMAEIDHALNAK 542
            R LMMSTNNIL PANG+PIIVPSQD+VLGLYY++       GEG +FA++ E+D    A 
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG 540

Query: 543  AITLATKIKGRYIGI--GPDGK--QYSKIYETTPGRMKIGELLPKDPKLSYDVVNKLMTK 598
               L  KIK R        DG   + ++I +TT GR  + +++P    L YDVVN+ M K
Sbjct: 541  EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAG--LPYDVVNQPMKK 598

Query: 599  KEISNMIDAVYRHCGQKESVIFCDRIMALGFYNAFRAGISFGKDDMVVPKKKWELVEETR 658
            K IS +I+  YR  G KE+VIF D++M  GF  +  +G+S G +D V+P +K  ++    
Sbjct: 599  KAISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGNAT 658

Query: 659  ALTKEYEQQYNDGLITQGEKYNKVVDAWGKCSDRVAEEMMKEISSVKKDPKTGRE---KQ 715
               KE E QY  GL+TQGEKYNKV+D W K +D V++ MM  +S  K   + G+E   + 
Sbjct: 659  DEVKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQES 718

Query: 716  INSIYMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIESPIISNFKEGLTVMEYFNSTHG 775
             NS+YMM+ SGARGS AQ++QLAGMRGLMAKP G IIE+PI +NF+EGL+V++YF STHG
Sbjct: 719  FNSMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHG 778

Query: 776  ARKGLADTALKTANSGYLTRRLVDVAQDSIITERDCGSEKGIHMRAIIDAGQIVASLASR 835
            ARKGLADTALKTANSGYLTRRLVDVAQD ++TE DCG+++G+ M   I+ G +V  L  R
Sbjct: 779  ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLVMTPHIEGGDVVEPLGER 838

Query: 836  VLGRTAAEDIVEPATGDVIVPKGQMIEEPHVERINKSGIQEIKIRSVLTCETRNGVCGTC 895
            VLGR  A D+ +P T DVIVP G +++E  VE I  + I E+ +RS + CETR G+C  C
Sbjct: 839  VLGRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVIVRSPINCETRYGICAKC 898

Query: 896  YGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAA---TLADSSFVESNFEG 952
            YGRDLARG  VN+GEAVGVIAAQSIGEPGTQLTMRTFHIGGAA   + ADS  V++   G
Sbjct: 899  YGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNG--G 956

Query: 953  TVRIRNRNVARNSDGDLVVMARNLAVVIVDHDGTERAVNRVQYGARLKVDEGDTIKRGQR 1012
             VR+ N      +DG+LV ++R+  + I D  G ER   ++ YGA + V EG+ ++ G  
Sbjct: 957  MVRLHNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGEKVEAGAI 1016

Query: 1013 IAEWDPYTRPILSEVDGTVAFEDLMEGSSMNEQVDESTGIAKRVVTD--SRSGRGPELRP 1070
            +A+WDP+T PI++E+ GTV F  + E  ++  Q DE TG+    V D   R   G E+RP
Sbjct: 1017 VAKWDPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRP 1076

Query: 1071 AILIKGKDGKIIKLPRGGD--ARYALPVEAIISVDPNQTLKAGDAVARVPLESAKTRDIT 1128
            AI +    GK + LP G D  A+Y LP  A++ V     +  GD +AR+P E++KTRDIT
Sbjct: 1077 AIKMVDAAGKDLYLP-GTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDIT 1135

Query: 1129 GGLPRVAELFEARRPKDAAIIAEISGSIRFGRDYKNKRRLSIEPTDGGDPVEYLIPKGKH 1188
            GGLPRVA+LFEARRPK+A+I+AE+SG+I FG++ K KRRL I PTDG +P E LIPK +H
Sbjct: 1136 GGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSEPYEELIPKWRH 1195

Query: 1189 IHLQDGDVVEKGDFIVDGNPAPHDILAIKGVEELAAFLVNEIQEVYRLQGVHINDKHIEV 1248
            +++ +G+ V +G+ I DG   PHDIL + GV  LA ++VNEIQ+VYRLQGV INDKHIE 
Sbjct: 1196 LNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIET 1255

Query: 1249 IVRNMLQKVEIDDSGETDFLDNEQVDRLEFLEANEKAAEEGKKPATGHPVLLGITKASLQ 1308
            I+R ML+KVEI +SG++ F+  +Q++  + L  NE+ A E K  +    VLLGITKASL 
Sbjct: 1256 ILRQMLRKVEISESGDSSFIKGDQMELTQVLVENERLASEDKFISKFTRVLLGITKASLS 1315

Query: 1309 TRSFFSAASFQETTRVLTEAAVNGKIDPLEGLKENVIVGRLIPAGTG 1355
            T SF SAASFQETTRVLTEAAV GK D L GLKENV+VGRLIPAGTG
Sbjct: 1316 TESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTG 1362