Pairwise Alignments

Query, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

Subject, 447 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Rhodanobacter sp000427505 FW510-R12

 Score =  126 bits (316), Expect = 1e-33
 Identities = 127/438 (28%), Positives = 188/438 (42%), Gaps = 39/438 (8%)

Query: 3   EFRIERMGAQGDGIVRGPSGPLFAPLTLAGELVRGEVEGERIRLDA-----IIELSPERV 57
           E  I  +   G G+ R     +F    L GE V  ++       D      ++  SP RV
Sbjct: 13  EAHITALAHDGRGVARIDGKTVFVSGALLGEQVTAKLRKRHRHFDEAEVVEVLVASPHRV 72

Query: 58  EPECPHFGRCGGCLLQHWESAPYLAWKRQMVVDALSREGIEADVA--PTIDAHGAG-RRR 114
           EP C HF  C GC LQH ++A  +  K++++ +   R G  A  +  P + A   G RR+
Sbjct: 73  EPRCRHFAECSGCSLQHLDAAAQIEAKQRVLAENFERIGKVAPASWLPPLTAEPWGYRRK 132

Query: 115 VIFHARQYG--ARTVVGFAERKSHAMVA-IDACPVLAPGLDQALPAARAVAEALAPLKKP 171
                R      R +VGF E ++   V  I  C V+ P L    P    +AE L  +   
Sbjct: 133 GRLSVRNVAKKGRVLVGFREEQNPRFVTEIQQCEVMHPALG---PKVGLLAELLGTMDAV 189

Query: 172 LD---LQLIATDTGLDMDVRGSGPLPPALLTDLAVIADRFRLARLTRHGEL----VIQRE 224
            D   ++  A D  + +  R   PL    L  L     +   A   + G       +  E
Sbjct: 190 NDVPQIEFAAGDDLMALVFRHMQPLSEHDLAALTAFGQQHGFAIYLQPGGTSSVHPLWPE 249

Query: 225 PPRLAM----GRAR-----VDLPPAAFLQATAEGERVLADHVAAGMVGAR---KVADLFA 272
            PRLA     G AR     ++  P  F+Q  A G   L    A  ++  +   +V DLF 
Sbjct: 250 HPRLAFRIASGDARYADVELEFQPLDFVQVNA-GMNQLMMARAMELLDPQPTDRVLDLFC 308

Query: 273 GVGTFALRLA-ETARVFAAENHAGALAALLKAGHTPGLKGVDGEARDLFRRPLMAAELA- 330
           G+G F L +A   A V   E   G +    +     G+        +LF     AA+ A 
Sbjct: 309 GLGNFTLPIARRVAEVVGVEGEHGLVERAAQNAARNGIANACFHVANLF-EDQRAADWAK 367

Query: 331 -AFDAVVIDPPRQGAEAQARELAVSRLPRLVYVSCNAATFARDAALLV-AGGMRLEGVVP 388
             +D +++DPPR GA+     L   +  R+VY+SC+ A+ ARDA +LV   G RL     
Sbjct: 368 QPWDKLLLDPPRAGADKLLDYLPHKQTRRIVYISCHPASLARDAGILVERHGFRLAAAGV 427

Query: 389 VDQFRYSAHVELVATFSR 406
           +D F +++HVE +A F R
Sbjct: 428 MDMFPHTSHVESIALFER 445