Pairwise Alignments

Query, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

Subject, 450 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 from Pseudomonas fluorescens GW456-L13

 Score =  150 bits (378), Expect = 9e-41
 Identities = 145/422 (34%), Positives = 182/422 (43%), Gaps = 28/422 (6%)

Query: 6   IERMGAQGDGIVRGPSGPLFAPLTLAGELVRGEVEGER-----IRLDAIIELSPERVEPE 60
           IER+   G GI        F    LAGE +   V G        R + + + S  R    
Sbjct: 31  IERLANDGRGIAFFEGRTWFVIGALAGEEIEARVLGAHGKVVEARTERVFKASELRRPAP 90

Query: 61  CPHFGRCGGCLLQHWESAPYLAWKRQMVVDALSR-EGIEAD--VAPTIDAHGAGRRRVIF 117
           C H GRCGGC +QH      LA K++M+ + LSR  G+E D   AP   A  A RRR   
Sbjct: 91  CAHAGRCGGCSVQHLPHNEQLALKQRMLAEQLSRVAGVEPDEWAAPLSGAEFAYRRRARV 150

Query: 118 HAR--QYGARTVVGFAERKSHAMVAIDACPVLAPGLDQALPAARAVAEALAPLKKPLDLQ 175
             R      +  VGF    S  +V ID CPVL   L    P    + E L  L KP  L 
Sbjct: 151 AVRWDMKAKKLEVGFRAAGSQDIVGIDDCPVLVQPLQ---PIMARLPEMLRRLSKPQALG 207

Query: 176 LIATDTGLDMDV--RGSGPLPPALLTDLAVIADRFRLARLTRHGELVIQREPP------R 227
            +   +G  + V  R   PL  A LT L      F  A+L  HG+   Q          R
Sbjct: 208 HVELFSGSTLAVLLRHMAPLSDADLTILKEFC-AFHEAQLWLHGDGEPQPVEADQSLGYR 266

Query: 228 LAMGRARVDLPPAAFLQATAEGERVLADHVAAGM--VGARKVADLFAGVGTFALRLAETA 285
           L      +   P  F+Q  A     +       +      +V DLF G+G FAL LA+ A
Sbjct: 267 LEQWDLELAYRPGDFIQVNAAVNEAMVAQALDWLKPTADERVLDLFCGLGNFALPLAKAA 326

Query: 286 R-VFAAENHAGALAALLKAGHTPGLKGVDGEARDLFRRPLMAAELAA--FDAVVIDPPRQ 342
           R V A E     +        +  L        DL  +PL  AE AA  F AV++DPPR 
Sbjct: 327 REVVAVEGVQVMVDRAAANAASNNLHNAKFFQADL-SQPLTDAEWAAEGFCAVLLDPPRD 385

Query: 343 GAEAQARELAVSRLPRLVYVSCNAATFARDAALLVAGGMRLEGVVPVDQFRYSAHVELVA 402
           GA    R+L      RLVYVSCN AT ARD   L+  G RL+    +D F  +AHVE +A
Sbjct: 386 GAFEVVRKLRSLGAERLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQTAHVEAMA 445

Query: 403 TF 404
            F
Sbjct: 446 LF 447