Pairwise Alignments

Query, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

Subject, 478 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) from Variovorax sp. SCN45

 Score =  107 bits (268), Expect = 6e-28
 Identities = 122/415 (29%), Positives = 169/415 (40%), Gaps = 54/415 (13%)

Query: 42  ERIRLDAIIELSPERVEPECPHFG----RCGGCLLQHWESAPYLAWKRQMVVDALSREGI 97
           E+  + AI   S +RV P CPHFG     CGGC +QH ++A  +A K++ + D L   G 
Sbjct: 63  EQGTVTAIRRESSQRVRPGCPHFGLHTGACGGCKMQHLDAAAQVAVKQRALEDNLWHLGK 122

Query: 98  ---EADVAPTIDAHGAGRRRVIFHARQYGAR--TVVGFAERKSHAMVAIDACPVLAPGLD 152
              E  + P        R R     R    +   ++GF ERKS  +  +  CPVL   + 
Sbjct: 123 VKPENLLRPLEGPAWHYRYRARLSVRHVVKKGTVLIGFHERKSRYLADMQVCPVLPKQVS 182

Query: 153 QALPAARAVAEALAPLKKPLDLQLIATDTGLDMDVRGSGPLPPALLTDLAVIADRFRLAR 212
           + L   RA+  +L        ++L   D   D    G+  L    L  L+  AD  RL  
Sbjct: 183 EMLMPLRALIGSLDARDTCPQIELACGDAP-DSTKLGTIALVLRHLEPLSR-ADIDRLKA 240

Query: 213 LTRHGELV---IQREPP---------------RLAMGRARVDLPPAAFLQATAEGERVLA 254
                E V   +Q + P               RL      +   P  F Q      R L 
Sbjct: 241 FAAENEGVQWWLQAKGPDTVKLLEEGGSPLSYRLPEFGVTMPFKPTDFTQVNPHINRALV 300

Query: 255 DHVAA--GMVGARKVADLFAGVGTFALRLAETARVFAAENHAGALAALLKAGHTPGLKGV 312
                   +    +V D F G+G F L LA  AR       +  L A   A +       
Sbjct: 301 GKALRLLDVQPDERVIDWFCGLGNFTLPLASQAREVLGIEGSDTLVARATANYGTNQPAT 360

Query: 313 DGE---------ARDLFRR-PLMAAELAAFDAVVIDPPRQGAEAQARELA-VSRLP---- 357
                       AR+LF   P M  E  + D  ++DPPR+GA A A+ +A + + P    
Sbjct: 361 SARRELSPAKFVARNLFEMTPAMLVEDGSADKWLVDPPREGAFALAKAMADLHQQPELCT 420

Query: 358 -------RLVYVSCNAATFARDAALLV-AGGMRLEGVVPVDQFRYSAHVELVATF 404
                  R+VYVSCN +T ARDA LLV   G R      V+ F ++AHVE +A F
Sbjct: 421 DGWTPPKRIVYVSCNPSTLARDAGLLVHQAGYRCTFAGVVNMFPHTAHVESIAVF 475