Pairwise Alignments

Query, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

Subject, 450 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Ralstonia solanacearum PSI07

 Score =  134 bits (338), Expect = 4e-36
 Identities = 135/426 (31%), Positives = 192/426 (45%), Gaps = 44/426 (10%)

Query: 20  PSGPLFAPLTLAGELV-----RGEVEGERIRLDAIIELSPERVEPECPHFGRCGGCLLQH 74
           P   +F    L GE V     R +   E+  L  I+  S  RV P+C  FG CGGC +QH
Sbjct: 29  PGKVVFVEGALPGERVTYRSHRVKPSYEQATLVDILRQSASRVTPQCKFFGVCGGCSMQH 88

Query: 75  WESAPYLAWKRQMVVDALSREG-IEADVA--PTIDAHGAGRRRVIFHARQYGAR--TVVG 129
            +S   LA K++++ D L     +  DV   P        R R     R   A+   +VG
Sbjct: 89  LDSRAQLAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAKGGVLVG 148

Query: 130 FAERKSHAMVAIDACPVLAPGLDQALPAARAVAEALAPLKKPLDLQLIATDTGLDMDVRG 189
           F ERKS  +  + +C VL P +   L   R +   L+ +++   ++L        + +R 
Sbjct: 149 FHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIVQRMPQIELAVGQDVTALVLRI 208

Query: 190 SGPLPPALLTDLAVIADRFRLAR-LTRHGELVIQREPP-----RLAMGRARVDLP--PAA 241
             PL PA   +L   ADR  +   L   G   +    P        +    + +P  P  
Sbjct: 209 LEPLTPADEAELRAFADRHAVQFWLQPKGPDTVYPFYPLDRALTYTLPEFGITMPFKPTD 268

Query: 242 FLQATAEGERVLADHVAAGMVGAR---KVADLFAGVGTFALRLAETARVFAAENHAGALA 298
           F Q   +  RVL   V   ++ A+   ++ DLF G+G F L +A   R       +  L 
Sbjct: 269 FTQVNHQINRVLMSRVLK-LLDAQPGDRLLDLFCGIGNFTLPMATRGREVMGIEGSETLT 327

Query: 299 --ALLKAGHTPGLKGVDGEA----RDLFRRPLM-AAELAAFDAVVIDPPRQGAEAQAREL 351
             AL  A H     G+D +     R+LF       AEL  FD  ++DPPR+GA A ++ L
Sbjct: 328 TRALANAQHN----GLDAKTTFACRNLFEVTADDIAELGRFDRWLVDPPREGALAVSKAL 383

Query: 352 A---------VSRLP-RLVYVSCNAATFARDAALLV-AGGMRLEGVVPVDQFRYSAHVEL 400
           A          + LP R+VYVSCN AT ARDA LLV   G RL G   V+ F +++HVE 
Sbjct: 384 AELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYRLAGAGVVNMFPHTSHVES 443

Query: 401 VATFSR 406
           +A F R
Sbjct: 444 IAVFER 449