Pairwise Alignments

Query, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

Subject, 361 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Pseudomonas putida KT2440

 Score = 58.5 bits (140), Expect = 3e-13
 Identities = 83/322 (25%), Positives = 128/322 (39%), Gaps = 63/322 (19%)

Query: 120 RQYGARTVVGFAERKSHAMVAIDACPVLAPGLDQALPAARAVAEALAPLKKPLD----LQ 175
           R+ G R    FA  + H  + ID  P+ +  ++  +P  +A  +A   L   L     L 
Sbjct: 53  REDGQRHYAMFAPGEKHKAILIDDFPIASERINALMPRLKAAWQASEELGNRLFQVEFLT 112

Query: 176 LIATDTGLDMDVRGSGPLPPALLTDLAVIADRFRLARLTRHGELVIQREPPRLAMGR--- 232
            +A D  + M      PL  A   +   +A+   ++ + R        +  RL +GR   
Sbjct: 113 TLAGDAMITMCYHR--PLDEAWEVEARQLAEALGVSVIGRS-------KGKRLVIGRDYA 163

Query: 233 -ARVDL---------PPAAFLQAT-AEGERVLADHVAAGMVGARK--VADLFAGVGTFAL 279
             ++D+         P  AF Q   A  +++L+    A  +G R+  + +L+ G G F L
Sbjct: 164 VEKLDVAGRVFSYRQPEGAFTQPNGAVNQKMLSWAFEA--IGEREDDLLELYCGNGNFTL 221

Query: 280 RLAETAR-VFAAENHAGALAALLKAGHTPGLKGVDGEARDLFRRPLMAAELAA------- 331
            LA   R V A E        + K      L  +D  A D  R   ++AE          
Sbjct: 222 PLATRVRQVLATE--------ISKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVR 273

Query: 332 --------------FDAVVIDPPRQGAEAQARELAVSRLPRLVYVSCNAATFARDAALLV 377
                         F  V +DPPR G +    EL   R  R++Y+SCN  T A + A L 
Sbjct: 274 PFRRLEGIDLKSYQFGTVFVDPPRAGMDPDTCELT-RRFERILYISCNPETLAANIAQL- 331

Query: 378 AGGMRLEGVVPVDQFRYSAHVE 399
               R+E     DQF Y+ H+E
Sbjct: 332 QDTHRIERCALFDQFPYTHHME 353