Pairwise Alignments

Query, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

Subject, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

 Score =  148 bits (373), Expect = 4e-40
 Identities = 142/422 (33%), Positives = 189/422 (44%), Gaps = 28/422 (6%)

Query: 6   IERMGAQGDGIVRGPSGPLFAPLTLAGELVRGEVEGER-----IRLDAIIELSPERVEPE 60
           IER+   G GI        F    LAGE V   V   R      RL+ +++ +PER E  
Sbjct: 33  IERLAGDGRGIAFLDGRTWFVSGALAGEAVEARVLNARGKVVEARLERLLQAAPERREAP 92

Query: 61  CPHFGRCGGCLLQHWESAPYLAWKRQMVVDALSR-EGI--EADVAPTIDAHGAGRRRVIF 117
           C ++ RCGGC LQH      LA K++ + + L R  G+  EA  AP        RRR   
Sbjct: 93  CRYYDRCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGYRRRARV 152

Query: 118 HAR-QYGARTV-VGFAERKSHAMVAIDACPVLAPGLDQALPAARAVAEALAPLKKPLDLQ 175
             R    AR + VGF    S  ++AID C VL   L   L   R +   L  L KP  L 
Sbjct: 153 AVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSIL---RHLPTVLRSLSKPQALG 209

Query: 176 LIATDTGLD--MDVRGSGPLPPALLTDLAVIADRFRLARLTRHGELVIQREPPRLAMGRA 233
            +   +G    + VR   PLP      L    ++   A+L   GE       P   +G A
Sbjct: 210 HVELFSGTAEAVLVRHVAPLPAEDQARLQAFCEQAN-AQLWLQGEGEPAPVDPAAQLGFA 268

Query: 234 ----RVDLP--PAAFLQATAEGERVLADHVAAGMV--GARKVADLFAGVGTFALRLAETA 285
               +++L   P  F+Q  A+    + +   A +      +V DLF G+G FAL LA  A
Sbjct: 269 LAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQA 328

Query: 286 R-VFAAENHAGALAALLKAGHTPGLKGVDGEARDLFRRPLMAAELAA--FDAVVIDPPRQ 342
           R V A E     +           +        DL  +PL     AA  F AV++DPPR 
Sbjct: 329 REVVAVEGVQAMVDRAAANARNNNVHNARFFQADL-SQPLAGTGWAAEGFSAVLLDPPRD 387

Query: 343 GAEAQARELAVSRLPRLVYVSCNAATFARDAALLVAGGMRLEGVVPVDQFRYSAHVELVA 402
           GA    + +A  +  RLVYVSCN AT ARDA +LV  G RL+    +D F  +AHVE +A
Sbjct: 388 GAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVEAMA 447

Query: 403 TF 404
            F
Sbjct: 448 LF 449