Pairwise Alignments

Query, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

Subject, 450 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas fluorescens SBW25

 Score =  154 bits (389), Expect = 5e-42
 Identities = 148/426 (34%), Positives = 190/426 (44%), Gaps = 36/426 (8%)

Query: 6   IERMGAQGDGIVRGPSGPLFAPLTLAGELVRGEVEGER-----IRLDAIIELSPERVEPE 60
           IER+   G GIV       F    LAGE V   V G        R + + + S  R    
Sbjct: 31  IERLANDGRGIVFFEGRTWFVNGALAGEDVEARVLGTHGKIVEARTERVFKSSELRRPAP 90

Query: 61  CPHFGRCGGCLLQHWESAPYLAWKRQMVVDALSR-EGIEA-DVAPTIDAHGAGRRRVIFH 118
           C HFGRCGGC +QH   A  LA K++M+ + LSR  G+E  + A  +     G RR    
Sbjct: 91  CAHFGRCGGCSVQHLPHAEQLALKQRMLAEQLSRVAGVEPQEWAAPLSGPEFGYRRRARV 150

Query: 119 ARQYGART---VVGFAERKSHAMVAIDACPVLAPGLDQALPAARAVAEALAPLKKPLDLQ 175
           A ++ A+     VGF    S  +VAID CPVL   L    P  + +   L  L KP  L 
Sbjct: 151 AVRWDAKAKHLAVGFRAVASQDIVAIDDCPVLVQALQ---PIMQRLPNMLRRLSKPQALG 207

Query: 176 LIATDTGLDMDV--RGSGPLPPALLTDLAVIAD--RFRLARLTRHGELVIQREPP----- 226
            +   +G  + V  R   PL  A   DL ++ +   F  A+L  HGE   Q EP      
Sbjct: 208 HVEVFSGTSIAVLLRHMAPLSEA---DLHILKEFCTFHDAQLWLHGEG--QPEPVDADAV 262

Query: 227 ---RLAMGRARVDLPPAAFLQATAEGERVLADHVAAGMVGA--RKVADLFAGVGTFALRL 281
              RL      +   P  F+Q  A     +       +      +V DLF G+G FAL L
Sbjct: 263 LGFRLEQWDLELAYRPGDFVQVNAGVNAAMVAQALEWLAPQPDERVLDLFCGLGNFALPL 322

Query: 282 AETAR-VFAAENHAGALAALLKAGHTPGLKGVDGEARDLFRRPLMAAELA--AFDAVVID 338
           A   R V A E     +        +  L        DL  +PL  AE A   F AV++D
Sbjct: 323 ARQVREVVAVEGVQTMVDRAAVNAVSNNLHNAQFFQADL-SQPLTDAEWAKQGFSAVLLD 381

Query: 339 PPRQGAEAQARELAVSRLPRLVYVSCNAATFARDAALLVAGGMRLEGVVPVDQFRYSAHV 398
           PPR GA    R+LA  +  RLVYVSCN AT ARD   LV  G RL+    +D F  +AHV
Sbjct: 382 PPRDGALEVVRKLATLKAKRLVYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHV 441

Query: 399 ELVATF 404
           E +A F
Sbjct: 442 EAMALF 447