Pairwise Alignments

Query, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

Subject, 415 a.a., tRNA (uracil-5-)-methyltransferase related protein from Caulobacter crescentus NA1000 Δfur

 Score =  333 bits (853), Expect = 7e-96
 Identities = 195/415 (46%), Positives = 251/415 (60%), Gaps = 13/415 (3%)

Query: 3   EFRIERMGAQGDGIVRGPSG-PLFAPLTLAGELVRGEVEGERIRLDAIIELSPERVEPEC 61
           +  I  +GAQGDG+ R   G P F PLTL GE+VR +++G R  +  I+  SPERV P C
Sbjct: 3   DLTINAIGAQGDGLARTADGKPAFVPLTLPGEVVRAKMDGARGEVVEILAPSPERVAPAC 62

Query: 62  PHFGRCGGCLLQHWESAPYLAWKRQMVVDALSREGIEADVAPTIDAHGAGRRRVIFHARQ 121
            H+G CGGC LQHW + PY AWK + V   LS EG+E ++ PT  A  A RRRV  HAR+
Sbjct: 63  RHYGVCGGCALQHWAAEPYRAWKAEQVRLQLSMEGLETEILPTFAAPPASRRRVALHARK 122

Query: 122 ----YGARTVVGFAERKSHAMVAIDACPVLAPGLDQALPAARAVAEA-LAPLKKPLDLQL 176
                GAR  +GF ER+S  +V+I+ CPV  P L  ALPA   +AE  L   K    L +
Sbjct: 123 GGKGQGAR--LGFKERRSWNLVSIEECPVTDPRLVAALPALARLAEPFLEHPKSAPTLHV 180

Query: 177 IATDTGLDMDVRG----SGPLPPALLTDLAVIADRFRLARLTRHGELVIQREPPRLAMGR 232
             T TGLD+D+ G    SG L        A+ A     AR+T  GE +     P + +G+
Sbjct: 181 TLTATGLDIDITGVERKSGGLSADARMRAAMAAGEGDFARVTLAGETIYGARQPLVKLGQ 240

Query: 233 ARVDLPPAAFLQATAEGERVLADHVAAGMVGARKVADLFAGVGTFALRLAETARVFAAEN 292
           A V LPP +FLQA    E+ + +   A   GA +VADL+ GVGTF   LAE A+V+AAE 
Sbjct: 241 AVVALPPGSFLQAVPAAEKAMVELAVAEAQGASRVADLYCGVGTFTFPLAEVAQVYAAEM 300

Query: 293 HAGALAALLKA-GHTPGLKGVDGEARDLFRRPLMAAELAAFDAVVIDPPRQGAEAQAREL 351
            A A+ AL  A G  PGLK +  EARDL RRP+++ ELA  D VVIDPPR GA  Q  E+
Sbjct: 301 SAPAITALKAAIGGAPGLKPITAEARDLVRRPVLSTELAKTDVVVIDPPRAGAAEQTVEI 360

Query: 352 AVSRLPRLVYVSCNAATFARDAALLVAGGMRLEGVVPVDQFRYSAHVELVATFSR 406
           A S++ +++ VSCN  TFA+DA +LV  G +L  V PVDQF +S H+ELV  F+R
Sbjct: 361 AKSKVAKVLGVSCNPQTFAKDARVLVDAGFKLVRVTPVDQFVWSPHIELVGVFTR 415