Pairwise Alignments

Query, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

Subject, 433 a.a., 23S rRNA m(5)U1939 methyltransferase, SAM-dependent from Escherichia coli BL21

 Score =  127 bits (318), Expect = 8e-34
 Identities = 119/421 (28%), Positives = 186/421 (44%), Gaps = 44/421 (10%)

Query: 13  GDGIVRGPSGPLFAPLTLAGE-----LVRGEVEGERIRLDAIIELSPERVEPECPHFGRC 67
           G G+ R     LF P  L  E     +   + +  R ++   +  SPER  P CPHFG C
Sbjct: 28  GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87

Query: 68  GGCLLQHWESAPYLAWKRQMVVDALSREGIEADVAPTIDAHGAGRRRVIFHARQYGARTV 127
           GGC  QH      +  +++    AL+R  ++ DV+  I     G RR    +  Y  +T 
Sbjct: 88  GGCQQQHAS----VDLQQRSKSAALARL-MKHDVSEVIADVPWGYRRRARLSLNYLPKTQ 142

Query: 128 ---VGFAERKSHAMVAIDACPVLAPGLDQALPAARAVAEALAPLKKPLDLQLIATDTGLD 184
              +GF +  S  +V +  CP+LAP L+  LP  RA   +L  ++    ++L+   +G  
Sbjct: 143 QLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTL 202

Query: 185 MDVRGSGPLPPALLTDLAVIADRFRLARLTRHGEL------------VIQREPPRLAMGR 232
           M +R + PL  A         DR +L R +    L             +  E P      
Sbjct: 203 MILRHTAPLSSA---------DREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNG 253

Query: 233 ARVDLPPAAFLQATAE-GERVLADHVAAGMVGAR-KVADLFAGVGTFALRLA-ETARVFA 289
            R+   P  F+Q  A   ++++A  +    V    +V DLF G+G F L LA + A V  
Sbjct: 254 LRLTFSPRDFIQVNAGVNQKMVARALELLDVQPEDRVLDLFCGMGNFTLPLATQAASVVG 313

Query: 290 AENHAGALAALLKAGHTPGLKGV----DGEARDLFRRPLMAAELAAFDAVVIDPPRQGAE 345
            E     +    +     GL+ V    +    D+ ++P        FD V++DP R GA 
Sbjct: 314 VEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN---GFDKVLLDPARAGAA 370

Query: 346 AQARELAVSRLPRLVYVSCNAATFARDAALLVAGGMRLEGVVPVDQFRYSAHVELVATFS 405
              +++      R+VYVSCN AT ARD+  L+  G  +  +  +D F ++ H+E +  FS
Sbjct: 371 GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430

Query: 406 R 406
           R
Sbjct: 431 R 431