Pairwise Alignments

Query, 424 a.a., Outer membrane efflux protein BepC from Xanthobacter sp. DMC5

Subject, 479 a.a., channel protein TolC from Pseudomonas simiae WCS417

 Score = 97.8 bits (242), Expect = 6e-25
 Identities = 117/439 (26%), Positives = 175/439 (39%), Gaps = 45/439 (10%)

Query: 2   AYTNNPTLNAQRAGTRATDETVPQALSGYRPTLNATAQAGPEFAKQQASGVKTN----GW 57
           A  NN  L A RA   A  E VPQA +G  P L   A       +        N     W
Sbjct: 39  AVDNNADLAAARAQYGAQKEVVPQARAGLLPNLTGGADINNVRTQIDTPAATANRDAHSW 98

Query: 58  LWPRAFALNAAYTLFNGFVTANQTRNAESQVRGSRETLRNTEQSVLLNGVTAYMNVIQAI 117
               +  L  A   F       Q + AE+    +   L  TEQ+++L     Y  V++A 
Sbjct: 99  RATLSQPLFRADRWF-------QLQAAEATNEQAALQLSATEQNLILQSAENYFAVLRAQ 151

Query: 118 ALLELQNKSLAAFQQELRATRDRFNVGEVTRTDVAQAEARVADA-------QYQVSQAVA 170
             L        AF+++L  + +RF+VG   +TDV Q++A    A       Q QV  A  
Sbjct: 152 DNLASTKAEENAFKRQLDQSNERFDVGLSDKTDVLQSQASYDTARANRILAQRQVEDAFE 211

Query: 171 NLST-AKANYRQVIGVEPGKLTTPRSIEGTLPVSVDKVISTGLSSHPAVKASEFAVDAAM 229
            L T     Y  + G+       P      LP      + T    +  + AS +AV AA 
Sbjct: 212 ALITLTNRQYNSIQGIVHTLPVLP-----PLPNDAKAWVETAGRQNLNLLASNYAVTAAE 266

Query: 230 FQVKVAEGGLMPNLSLQGQLSQSYDQ--NFSVDSQAGA---------AMTLNLSVPIYQG 278
             +K  + G  P L    Q  +  +    FS  +  G           + L LS+PIY G
Sbjct: 267 ETLKQRKAGHAPTLDAVAQYEKGDNDALGFSNPNAFGTPYRGDVEQRTIGLRLSIPIYSG 326

Query: 279 GVEYANIRQAKELLTQARIEVDVNRDTIRAQAVQYWGALEAA----KAQIQAAQASVAAN 334
           G+  + +R++   L Q     +  R+ +R Q V+    L  A      Q+QA + S+ +N
Sbjct: 327 GLTSSQVRESYSRLGQ----TEQQREGLRRQVVENTRNLHRAVNTDVEQVQARRQSIISN 382

Query: 335 TLALEGVREEWRVGQRTTTDVLNAQRDLTNSQSSLVVAQRDRVVAAYALVSTIGRLDALS 394
             A+E     ++VG R   DVL++QR L  S  +   ++ D ++    L    G L+   
Sbjct: 383 QSAVEATEIGYQVGTRNIVDVLDSQRQLYASVRNYNNSRYDYILDNLRLKQAAGTLNPGD 442

Query: 395 LGLKVNYYDPRVHYNQVRD 413
           L     Y   +  YN  RD
Sbjct: 443 LQDLARYL--KADYNPDRD 459