Pairwise Alignments

Query, 262 a.a., Exodeoxyribonuclease III from Xanthobacter sp. DMC5

Subject, 270 a.a., exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI from Pseudomonas putida KT2440

 Score =  150 bits (379), Expect = 3e-41
 Identities = 92/270 (34%), Positives = 135/270 (50%), Gaps = 11/270 (4%)

Query: 1   MRIATWNANSIRQRLDHAVRWLGESRPDVVCIQEIKCQTEAFPKEPFEALGYNVSVHGQK 60
           M+I  +N N +R R       + + +PDV+ +QE K   + FP    +ALGY+V  HGQK
Sbjct: 1   MKIVCFNINGLRARPHQLAALIEKHQPDVIGLQETKVSDDQFPLADVQALGYHVHYHGQK 60

Query: 61  GFNGVALLSRLPLEDVTHGLAGDDGDEQARFI-EAVVSVKGGVVRVACIYLPNGNPPD-T 118
           G  GVALLSR P   +  G A D+ D Q RFI        G  + +   Y P G   D  
Sbjct: 61  GHYGVALLSRQPPLSLHKGFATDEEDAQRRFIWGTFADANGSPITIMNGYFPQGESRDHP 120

Query: 119 EKYPYKLGFMERLSAFAADRLKLEEPLVLAGDFNVIPESRDAA----DPAAW--TSDALF 172
            K+P K  F   L A    + + ++P+++ GD N+ P+  D      +   W  T    F
Sbjct: 121 TKFPAKQRFYSDLQALLESQFRNDQPVLVMGDMNISPQDCDIGIGPDNAKRWLKTGKCSF 180

Query: 173 LPRTRQAFRSLLNLGFTDALR-ATSDAGRLFTFWDYQAGAWQRD--NGIRIDHLLLSPQA 229
           LP  R+    L   G  D+ R    D    F+++DY++  ++ +   G+RID ++ S Q 
Sbjct: 181 LPEEREWMERLKGWGLVDSFRHLYPDVTDRFSWFDYRSRGFEDEPKRGLRIDLIMASQQL 240

Query: 230 ADRLIATGVDKHVRAWEKPSDHVPVWADFS 259
             R+ A GVD  +R  EKPSDH P+W + S
Sbjct: 241 VPRIKAAGVDYELRGMEKPSDHAPIWLELS 270