Pairwise Alignments

Query, 537 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  141 bits (355), Expect = 7e-38
 Identities = 143/551 (25%), Positives = 244/551 (44%), Gaps = 61/551 (11%)

Query: 6   ETLALSRRTLLAGAGASLLLPAAARRAGAAPATGGTLVAVLDPEPAGLVAGLTISAPAVA 65
           E +AL    L AG  A + L  AA           TLV   +  PAG       S     
Sbjct: 2   ERIALKPLLLAAGLLACMPLAQAA----------STLVYCSEASPAGFDPSQYTSGTDFD 51

Query: 66  VSAN-IFDGLVEYDEG-FKLKPSLATSWETSADGTVITFRLRNDVTWH------DGTPFT 117
            SA  +F+ L ++  G  +++P LATSW+ S DG   TF LR+ V +H          F 
Sbjct: 52  ASAETVFNRLTQFKRGGTEVEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFN 111

Query: 118 SADVAYS---LLEVT---KKVHPRGNAVFAN------LTAVDTPDPYTAVLR-------F 158
           + DV ++   LL+     ++ +P  +  F +      + +VD  D +T           F
Sbjct: 112 ADDVLFTFNRLLDAQSPFRQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASF 171

Query: 159 SRPSPVVWAAFNGTE--TQILPKHLYEGTNPLTNPLNGKPIGTGAFVFKEWVKGERIVLE 216
            +   + +A+    E   Q+L +   E        +N KP+GTG FVFK + K  +I   
Sbjct: 172 VQNLAMSFASVQSAEYAAQLLKQGKAE-------EINQKPVGTGPFVFKRYQKDSQIRYV 224

Query: 217 RNPNYWDKGRPYLDRVVFRIIRDPASRAAALETGEAQYIPLNPVPLSDVARIKASKDL-V 275
            N  YW      LD +VF I  D ASR   L+ GE Q +   P P +D+  +K   +L V
Sbjct: 225 ANKQYWKPEDVKLDNLVFAITPDAASRLQKLKAGECQ-VSGYPRP-ADIEVMKQDPNLHV 282

Query: 276 VETRGFEGPAPMYFFDFNLRREPFGDIRVRQAFAHALNRKALAETVFYGLAKPAAGPVPS 335
           ++  GF     + F  +N+   P   ++VRQA   A+++ A+ + V+    + A   +P 
Sbjct: 283 LQQAGFN----LGFLAYNVTHPPLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPP 338

Query: 336 YQTQFFATDLPQYDYNIAKAEALLDAAGLKKGADGVRLRIDHIPSAYGEDYRRAGEYFKQ 395
            Q  +  T +    Y+  KA+ALL  AG+  G   V L    +  A   + R + +  +Q
Sbjct: 339 AQWSYDPT-IKDAPYDPTKAKALLKEAGVAPGTT-VNLWAMTVQRASNPNARMSAQMIQQ 396

Query: 396 ALKRIGVDVTLRNYDLPTYIKVVFT-EYDFDTHSAWYSAYPDPQIGVQRRYWSQAIKKGT 454
             +++G+   + +Y+   YIK     E+D   +  W     DP   +   Y   A+K   
Sbjct: 397 DWEKVGIKANIVSYEWGEYIKRAKNGEHDAMIY-GWTGDNGDPDNWLGVLYSCAAVK--- 452

Query: 455 PSSNASGIADPEIDAVIERIQTEGNVEKRNADIRELQRLAQVKLPSVNLLELTFYRAYSA 514
             SN +   +P  D ++++ +   + E+R    ++ Q++ + ++P   +   T ++    
Sbjct: 453 -GSNYAKWCNPAYDKLVQQAKVSNDREQRIKWYQQAQKILKEQVPITPIANSTVFQPLRK 511

Query: 515 KLSGIDLAPFG 525
           ++    ++PFG
Sbjct: 512 EVKDFKISPFG 522