Pairwise Alignments

Query, 537 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

Subject, 542 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  420 bits (1080), Expect = e-122
 Identities = 229/539 (42%), Positives = 318/539 (58%), Gaps = 13/539 (2%)

Query: 9   ALSRRTLLAGAGASLLLPAAA--------RRAGAAPATGGTLVAVLDPEPAGLVAGLTIS 60
           A  RR  L G GASL + A A          A  +P  GGTL  ++DPEP  L      +
Sbjct: 7   AFPRRHFLQG-GASLGVAALAGPMPAWAQAPAAGSPVRGGTLTVLIDPEPPTLTTIAHSA 65

Query: 61  APAVAVSANIFDGLVEYDEGFKLKPSLATSWETSADGTVITFRLRNDVTWHDGTPFTSAD 120
             +V +SA   +GL+ YD     +P LAT+W  SADG   TF LR  V WHDG PFTSAD
Sbjct: 66  GSSVLISAKTTEGLLTYDFDLSPQPQLATAWTVSADGLQYTFTLRRGVRWHDGKPFTSAD 125

Query: 121 VAYSLLEVTKKVHPRGNAVFANLTAVDTPDPYTAVLRFSRPSPVVWAAFNGTETQILPKH 180
           VA+S+  + K+ HPRG A F+++  V TPD YTAVL  S+P P +  A + +E+ I+P+H
Sbjct: 126 VAHSI-GLLKQYHPRGRATFSSVAEVRTPDAYTAVLVLSKPVPYLLTALSASESPIVPRH 184

Query: 181 LYEGTNPLTNPLNGKPIGTGAFVFKEWVKGERIVLERNPNYWDKGRPYLDRVVFRIIRDP 240
           LYE      NP N  PIGTG FVFKEWV+G  +  ERNP+YWD  +PY+DR++ R I D 
Sbjct: 185 LYESGKADANPANNAPIGTGPFVFKEWVRGSHVTYERNPDYWDNPKPYVDRLIVRFIPDA 244

Query: 241 ASRAAALETGEAQYIPLNPVPLSDVARIKASKDLVVETRGFEGPAPMYFFDFNLRREPFG 300
           A+RAAA+E GE    P  PVPL DV R++A  +LV E  G++    +   +FNL      
Sbjct: 245 AARAAAIEKGEVHLSPGTPVPLGDVERLRAKPNLVFEPNGYQYINNVSRVEFNLENPALQ 304

Query: 301 DIRVRQAFAHALNRKALAETVFYGLAKPAAGPVPSYQTQFFATDLPQYDYNIAKAEALLD 360
           D+RVRQA AHA+NR+ + +TV+YG  +   GPV     +F+  DLP   +++ +AEALLD
Sbjct: 305 DLRVRQAIAHAINRQVVQKTVWYGQGQLIPGPVHPALRKFYVPDLPVLPHDVKRAEALLD 364

Query: 361 AAGLKKGADG--VRLRIDHIPSAYGEDYRRAGEYFKQALKRIGVDVTLRNYDLPTYIKVV 418
           AAG  +G  G  +RL++  +P +  E  +R  EY KQ+L RIG++VT+ + D  TY++ V
Sbjct: 365 AAGFVRGKAGGNLRLKLAVVPIS-NEGGQRTAEYLKQSLGRIGIEVTIHSQDFATYVRRV 423

Query: 419 FTEYDFDTHSAWYSAYPDPQIGVQRRYWSQAIKKGTPSSNASGIADPEIDAVIERIQTEG 478
           + +  FD H +  S   DP +G+QR YWS+  KKG P SN SG ++PE+D ++E    E 
Sbjct: 424 YADRAFDLHVSVMSNTFDPTVGIQRLYWSKNFKKGLPFSNGSGYSNPEVDRLLEAAAVEI 483

Query: 479 NVEKRNADIRELQRLAQVKLPSVNLLELTFYRAYSAKLSGIDLAPFGGYQSLKTVWVGA 537
           +  +R     E QR     LP + LL +  Y     ++ G  ++  G   +L   W+GA
Sbjct: 484 DEGRRRQAFAEFQRHIVRDLPDITLLAIDNYTIADRRVRGHTVSADGIAGNLAGAWIGA 542