Pairwise Alignments

Query, 537 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

Subject, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  389 bits (1000), Expect = e-112
 Identities = 213/513 (41%), Positives = 294/513 (57%), Gaps = 3/513 (0%)

Query: 24  LLPAAARRAGAAPATGGTLVAVLDPEPAGLVAGLTISAPAVAVSANIFDGLVEYDEGFKL 83
           LL A      A P+  GTL  +   EP  LV    ++ P ++VSA + +GL++YD     
Sbjct: 18  LLAAGLAAHAAPPSHSGTLTLLSTSEPTALVTIGNVATPILSVSAKVTEGLLKYDYDVNP 77

Query: 84  KPSLATSWETSADGTVITFRLRNDVTWHDGTPFTSADVAYSLLEVTKKVHPRGNAVFANL 143
           +P LAT W  S DG   TF LR  V WHDG  FTSADVAYS+ E+ KK+HPRG   FANL
Sbjct: 78  QPQLATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADVAYSI-ELLKKIHPRGRNTFANL 136

Query: 144 TAVDTPDPYTAVLRFSRPSPVVWAAFNGTETQILPKHLYEGTNPLTNPLNGKPIGTGAFV 203
           TA+DTPD YTA+LR S+P+P +  A   TET I+PKH+YEGT+P  NP N  PIGTG F 
Sbjct: 137 TAIDTPDKYTAILRLSKPAPYLIRALVATETPIVPKHIYEGTDPANNPNNNAPIGTGPFK 196

Query: 204 FKEWVKGERIVLERNPNYWDKGRPYLDRVVFRIIRDPASRAAALETGEAQYIPLNPVPLS 263
           FKEWV+G  IV ERN +YWDK +P++D+++ R + DPA+ A A ETG        PVPL+
Sbjct: 197 FKEWVRGSHIVYERNNDYWDKPKPFVDQLIVRFVTDPAAAAVAFETGTVDLGYRTPVPLA 256

Query: 264 DVARIKASKDLVVETRGFEGPAPMYFFDFNLRREPFGDIRVRQAFAHALNRKALAETVFY 323
           D+ R+K    L  ET+G    + +   +FNL  E F + +VRQA AHA++R  + + V Y
Sbjct: 257 DLERLKKVPALRFETKGNSYSSNVTRLEFNLDNEYFKNEKVRQAVAHAIDRNVIVKVVNY 316

Query: 324 GLAKPAAGPVPSYQTQFFATDLPQYDYNIAKAEALLDAAGLKKGADGVRLRIDHIPSAYG 383
           G  + +  P+      F       Y +++ KA ALLD AG  K A GVR  +    +  G
Sbjct: 317 GYGQVSYSPIAPGLKAFHDPAPSPYAFDVKKANALLDEAGFPKKAGGVRFSVPLDFNPIG 376

Query: 384 EDYRRAGEYFKQALKRIGVDVTLRNYDLPTYIKVVFTEYDFD-THSAWYSAYPDPQIGVQ 442
            D  R  +Y + AL RIG+ VT+R  D   +IK ++T+ DF  TH+   + + DP +GVQ
Sbjct: 377 ADGPRLADYLRSALARIGIAVTVRAQDPSAFIKRIYTDRDFAFTHNGASNLF-DPTVGVQ 435

Query: 443 RRYWSQAIKKGTPSSNASGIADPEIDAVIERIQTEGNVEKRNADIRELQRLAQVKLPSVN 502
           R YWS+   KG P SN +   +P +D ++E    E +  KR    ++ Q      +P +N
Sbjct: 436 RLYWSKNFIKGVPFSNGTHYQNPVVDKLLEDAAVENDPGKRLKLFKDFQDTVARDVPDLN 495

Query: 503 LLELTFYRAYSAKLSGIDLAPFGGYQSLKTVWV 535
           L +  F    + ++    L   G   +L  VWV
Sbjct: 496 LYQPVFITIANQRVHDHSLTADGVESNLADVWV 528