Pairwise Alignments

Query, 537 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

Subject, 530 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  143 bits (360), Expect = 2e-38
 Identities = 128/506 (25%), Positives = 217/506 (42%), Gaps = 34/506 (6%)

Query: 42  LVAVLDPEPAGLVAGLTISAPAVAVSANIFDGLVEYDEG-FKLKPSLATSWETSADGTVI 100
           LV   +  PAG       SA     +  I++ LVE++ G   + P+LAT WE S +G   
Sbjct: 27  LVFCSEGSPAGFDTAQYTSATDNDAAEPIYNRLVEFERGGTAVHPALATHWEVSDNGLRY 86

Query: 101 TFRLRNDVTWHDGTPFTSA------DVAYSLLEVTKKVHP------------RGNAVFAN 142
           TF LR  V +H    F+ +      DV ++   +  K H              G  +  N
Sbjct: 87  TFHLREGVRFHSNKAFSPSRTFNADDVLFTFNRMLDKGHRFRQAYPTEFPYFNGMGLDKN 146

Query: 143 LTAVDTPDPYTAVLRFSRPSPVVWAAFNGTETQILPKHLYEGTNPLTNP--LNGKPIGTG 200
           +  V+  DP T V   +            +   IL     E       P  +N +PIGTG
Sbjct: 147 IARVEKTDPLTVVFTLNTVDAAFIQNLAMSFASILSAEYAEQLLASGRPSDINQQPIGTG 206

Query: 201 AFVFKEWVKGERIVLERNPNYWDKGRPYLDRVVFRIIRDPASRAAALETGEAQYIPLNPV 260
            FVF+ + K  +I  + N +YW      +D +VF I  DP+ R   L   E Q + L+P 
Sbjct: 207 PFVFQRYQKDSQIRYKGNKDYWAANEVKIDNLVFSINTDPSVRIQKLRRNECQ-VTLHPR 265

Query: 261 PLSDVARIKASKDL-VVETRGFEGPAPMYFFDFNLRREPFGDIRVRQAFAHALNRKALAE 319
           P +D+  +KA   L V++  GF     + +  +N +  PF  + VRQA   A+N++A+ +
Sbjct: 266 P-ADLPALKADSTLQVLQQPGFN----LGYIAYNTQHPPFDRLEVRQAMDMAVNKEAILQ 320

Query: 320 TVFYGLAKPAAGPVPSYQTQFFATDLPQYDYNIAKAEALLDAAGLKKGADGVRLRIDHIP 379
            V+    + A   +P  Q   +   +    Y   KA  L+  AG+K G + + L    + 
Sbjct: 321 AVYQDAGQRAVNAMPPTQWS-YDDSIKDAPYAPEKARQLIQQAGVKPGTE-ITLWAMPVQ 378

Query: 380 SAYGEDYRRAGEYFKQALKRIGVDVTLRNYDLPTYIKVVFTEYDFDTHSAWYSAYPDPQI 439
             Y  + +   E  +    ++G  V + +Y+   Y+K +           W     DP  
Sbjct: 379 RPYNPNAKLMAEMLQADWSKLGFKVRIVSYEWGEYLKRMKNGEHDIALIGWTGDNGDPDN 438

Query: 440 GVQRRYWSQAIKKGTPSSNASGIADPEIDAVIERIQTEGNVEKRNADIRELQRLAQVKLP 499
            +   Y   AI     S+N S   DP+ D+++++ +   +  +R A  ++ Q+  + ++P
Sbjct: 439 WLGTLYSCDAI----GSNNYSQWCDPQYDSLVKQAKQVTDRTQRTALYQQAQQRLKQQVP 494

Query: 500 SVNLLELTFYRAYSAKLSGIDLAPFG 525
              +      +  S K+S   ++PFG
Sbjct: 495 ITPVAHSIVSQPLSVKVSQFKVSPFG 520