Pairwise Alignments

Query, 1358 a.a., DNA-directed RNA polymerase subunit beta from Xanthobacter sp. DMC5

Subject, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas putida KT2440

 Score = 1622 bits (4199), Expect = 0.0
 Identities = 822/1359 (60%), Positives = 1048/1359 (77%), Gaps = 7/1359 (0%)

Query: 1    MAQTFTGRKRIRKFFGKIKEVAEMPNLIEVQKASYDQFLQIEEPKGGRDDDGLQAVFKSV 60
            MA ++T +KRIRK F K+ +V ++P L+ +Q  SY +FLQ    K    D GL A FKSV
Sbjct: 1    MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSV 60

Query: 61   FPISDFSGAAMLEFVRYEFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPDTGAKSV 120
            FPI  +SG A LE+V Y    P +DV EC  RG+TFA PL+V +RLI+FD   ++  K++
Sbjct: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFD--KESSNKAI 118

Query: 121  KDIKEQDVYTGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA 180
            KDIKEQ+VY G+IPLMT NGTF++NGTERVIVSQ+HRSPGVFFDHD+GKTHSSGKLL++A
Sbjct: 119  KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178

Query: 181  RIIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLYALGLDSEEILSTFYEKIPYERAK 240
            RIIPYRGSWLD EFD KD V+ RIDRRRK+P + LL ALG  +EE+L+TFY    +  + 
Sbjct: 179  RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISG 238

Query: 241  GGWRMPFDPKRMKGYKAVSDLVDADTGEVVLEAGKKLTVRAARQLAEKGLKFLKISDEEM 300
                +   P+R++G  AV D+ D +TG+V++E G+++T R   QL + G+K L +  E +
Sbjct: 239  EKLSLELVPQRLRGEVAVMDIHD-ETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYV 297

Query: 301  VGQYIAEDLVDIASGEIHAEAGDEITEKTLKLLEEAGYNEIPILDIDHVNTGAYIRNTLA 360
            +G+  A+ +V  A+GEI AE   E+T + L  + +A    I  L  + ++ G +I +TL 
Sbjct: 298  LGRTTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLK 357

Query: 361  ADKNVTREDALFDIYRVMRPGEPPTLDSAQAMFHSLFFDPERYDLSAVGRVKMNMRLDLD 420
             D    + +AL +IYR+MRPGEPPT D+A+ +F++LFF  ERYDLSAVGR+K N R+   
Sbjct: 358  IDTTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRT 417

Query: 421  CPDTVRVLRRDDILSVIKTLVELRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRME 480
              +   VL ++DI+ V+KTLV++R+GKG +DDIDHLGNRRVR VGE+ ENQ+RVGL+R+E
Sbjct: 418  EIEGSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVE 477

Query: 481  RAIKERMSSVDIDTVMPQDLINAKPVAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA 540
            RA+KER+S  + + +MPQDLINAKPVAAAV+EFFGSSQLSQFMDQ NPLSEITHKRR+SA
Sbjct: 478  RAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSA 537

Query: 541  LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIEAPYR 600
            LGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLA +AR N+YGF+E+PYR
Sbjct: 538  LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYR 597

Query: 601  RVVDSKVTDEVVYLSAMEEGKYYVAQANIPLDKDGRFEEDLIVCRHAGDVLLVSPDRVDF 660
             V +  V+D++V+LSA+EE  + +AQA+  ++   +  ++L+  RH  +  + +P+ V  
Sbjct: 598  VVKEGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTL 657

Query: 661  MDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRSQAPLVGTGMEAVVARDS 720
            MDVSPKQ+VSVAA+LIPFLE+DDANRALMGSNMQRQAVP +R+  PLVGTGME  VARDS
Sbjct: 658  MDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDS 717

Query: 721  GAAIAARRTGVIDQVDATRIVIR-ATEEADPSKSGVDIYRLMKFQRSNQSTCINQRPLVR 779
            G  + ARR GVID VDA+RIV+R A +E +  ++GVDIY L K+ RSNQ+TCINQRPLV 
Sbjct: 718  GVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVS 777

Query: 780  VGDQVKRGDIIADGPSTELGELALGRNVLVAFMPWNGYNFEDSILLSENIVKEDVFTSIH 839
             GD+V+RGDI+ADGPST++GELALG+N+ +AFM WNG+NFEDSI LSE +V+ED FT+IH
Sbjct: 778  KGDKVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIH 837

Query: 840  IEEFECMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPKGE 899
            I+E  C+ARDTKLGPEEIT DIPNV E AL  LDEAGIVY+GAEV AGDILVGK+TPKGE
Sbjct: 838  IQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGE 897

Query: 900  SPMTPEEKLLRAIFGEKAADVRDTSLRLPPGTTGTIVEVRVFNRHGVDKDERALAIEREE 959
            + +TPEEKLLRAIFGEKA+DV+DTSLR+P GT GT+++V+VF R GV++D RALAIE+ +
Sbjct: 898  TQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQ 957

Query: 960  IERLAKDRDDEQAILDRNVYGRLTEILDGKVAIAGPKGFKKETAVTREILGEYPRSQWWL 1019
            ++ + KD ++E  I++   + RL   L+G+V + G  G KK T +T E+L      QW+ 
Sbjct: 958  LDEIRKDLNEEFRIVEGATFERLRSALNGQV-VDGGAGLKKGTVITDEVLDGLEHGQWFK 1016

Query: 1020 FAVADDAIMAELEAIRAQYDDSKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRK 1079
              +A+DA+  +LE  +    D ++ L+ +F DK  KLQ+GD+L PGV+K+VKV++A++R+
Sbjct: 1017 LRMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRR 1076

Query: 1080 IQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTNVDIVLNPLGVPSRMNVGQILETHLGW 1139
            IQPGDKMAGRHGNKGVVS I+PVEDMP   +GT VD+VLNPLGVPSRMNVGQILETHLG 
Sbjct: 1077 IQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGL 1136

Query: 1140 ACAGLGRQVAAAAEAYYARQDLKPVRDRLETIYG--KEEIDQLKDSELPELAENLRKGVP 1197
            A  GLG ++    E      +L+     +    G  +E +D+  D E+  LA NL+KGVP
Sbjct: 1137 AAKGLGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLKKGVP 1196

Query: 1198 MATPVFDGAHEADIEQELERAGLDRSGQSTLFDGRTGEPFDRKVTVGYIYMLKLHHLVDD 1257
            MATPVFDGA E +I+  L+ A L  SGQ  LFDGRTG  F+R VTVGY+YMLKL+HLVDD
Sbjct: 1197 MATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDD 1256

Query: 1258 KIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGR 1317
            K+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV GR
Sbjct: 1257 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1316

Query: 1318 TKVYEAIVRGEDTFESGIPESFNVLVKEMRSLGLNVDLE 1356
            TK+Y+ IV G+   E G+PESFNVL+KE+RSLG+++DLE
Sbjct: 1317 TKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLE 1355