Pairwise Alignments

Query, 536 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  152 bits (383), Expect = 4e-41
 Identities = 141/538 (26%), Positives = 241/538 (44%), Gaps = 53/538 (9%)

Query: 10  LAAAGASLAAVPMARAADGSPVRGGHLVSIVVPEPQTLGLTVSNPTIVIAINVYDGLVTY 69
           L AAG  LA +P+A+AA           +   P   T G          A  V++ L  +
Sbjct: 10  LLAAGL-LACMPLAQAASTLVYCSEASPAGFDPSQYTSGTDFD----ASAETVFNRLTQF 64

Query: 70  DGTGAP-RPQLAESYEQAPDGRSITFRLRKGVTWHDGV------PFTAADVKYSILEVVK 122
              G    P LA S++ + DG + TF LR GV +H          F A DV ++   ++ 
Sbjct: 65  KRGGTEVEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADDVLFTFNRLLD 124

Query: 123 KTHP------------RGIGTYSQLQDIETPDDHTVILRL-------AKPSPVIWSALNS 163
              P              +G  + ++ ++  DDHTV   L        +   + ++++ S
Sbjct: 125 AQSPFRQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQNLAMSFASVQS 184

Query: 164 SE--TQILPKHLYEGTDPLTNPWNTKPIGTGPFIFKEWVRGSHVTLERNPNYWDAGKPYL 221
           +E   Q+L +   E         N KP+GTGPF+FK + + S +    N  YW      L
Sbjct: 185 AEYAAQLLKQGKAEEI-------NQKPVGTGPFVFKRYQKDSQIRYVANKQYWKPEDVKL 237

Query: 222 DRLTFRFVPDAGARAAALETGEAQYVPLSPVPLSDVERLAKRPDL-VVETRGWEAVAPVF 280
           D L F   PDA +R   L+ GE Q V   P P +D+E + + P+L V++  G+     + 
Sbjct: 238 DNLVFAITPDAASRLQKLKAGECQ-VSGYPRP-ADIEVMKQDPNLHVLQQAGFN----LG 291

Query: 281 FLDFNMRRPQFQDVRVRRAIALAIDKKALARTVWYGFAEPATGPVPAFQTAFAATGLPQY 340
           FL +N+  P    ++VR+A+ +AIDK A+ + V+    + A   +P  Q ++  T +   
Sbjct: 292 FLAYNVTHPPLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWSYDPT-IKDA 350

Query: 341 DYDPKKAEALLDEAGLKRGPDGVRLRFNHVSIPYGDDFKRSGEFIRQQLKKVGIEVELLN 400
            YDP KA+ALL EAG+  G   V L    V      + + S + I+Q  +KVGI+  +++
Sbjct: 351 PYDPTKAKALLKEAGVAPGTT-VNLWAMTVQRASNPNARMSAQMIQQDWEKVGIKANIVS 409

Query: 401 YDLPTFLRKIYTEYDFDTLNAYYAAFADPQIGVQRRFWSQTIRPGSAWSNASGYSNPKVD 460
           Y+   ++++         +  +     DP   +   +    ++     SN + + NP  D
Sbjct: 410 YEWGEYIKRAKNGEHDAMIYGWTGDNGDPDNWLGVLYSCAAVK----GSNYAKWCNPAYD 465

Query: 461 ALLEAAAVEPDPQKRKALLGEFQLIVQTELPSISLLELKQFRVWSSRLKGVNVGPIGV 518
            L++ A V  D ++R     + Q I++ ++P   +     F+     +K   + P G+
Sbjct: 466 KLVQQAKVSNDREQRIKWYQQAQKILKEQVPITPIANSTVFQPLRKEVKDFKISPFGL 523