Pairwise Alignments

Query, 536 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

Subject, 534 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  167 bits (422), Expect = 1e-45
 Identities = 127/480 (26%), Positives = 223/480 (46%), Gaps = 38/480 (7%)

Query: 62  VYDGLVTYD-GTGAPRPQLAESYEQAPDGRSITFRLRKGVTWHDGVPF------TAADVK 114
           +Y+ LV ++ G     P LA  ++ +PDG + TF LR+GV +H    F       A DV 
Sbjct: 58  LYNRLVEFEKGETGVVPALATKWDISPDGMTYTFHLREGVKFHSNKEFKPTRDFNADDVL 117

Query: 115 YSILEVVKKTHP------------RGIGTYSQLQDIETPDDHTVILRLAKPSPVIWSALN 162
           ++   ++   HP             G+     +  +E  D HTV++ L          + 
Sbjct: 118 FTFNRMLDPDHPFRKAYPTEFPYFNGMSLNKNIAKVEKTDPHTVVMTLNTVDAAFIQNIA 177

Query: 163 SSETQILPKHLYEGTDPLTNPW--NTKPIGTGPFIFKEWVRGSHVTLERNPNYWDAGKPY 220
            S   IL     E       P   N KPIGTGPF+F+ + + S +    N  YWD  +  
Sbjct: 178 MSFAAILSAEYAEQLLKAGKPSDINQKPIGTGPFVFQRYQKDSQIRYVANKQYWDPSRVK 237

Query: 221 LDRLTFRFVPDAGARAAALETGEAQYVPLSPVPLSDVERLAKRPDLVVETRGWEAVAPVF 280
           LD+L F    DA  R   L+ GE Q V L P P +DV+ L   P+L + T+      P F
Sbjct: 238 LDQLIFAINTDASVRVQKLKAGECQ-VTLHPRP-ADVDALKADPNLKLLTK------PGF 289

Query: 281 ---FLDFNMRRPQFQDVRVRRAIALAIDKKALARTVWYGFAEPATGPVPAFQTAFAATGL 337
              ++ +N+R   F  + VR+A+ +A++K+++   V+ G  + A   +P  Q ++    +
Sbjct: 290 NLGYIAYNVRHKPFDQLEVRQALDMAVNKQSILNAVYQGAGQLAVNAMPPTQWSY-DDSI 348

Query: 338 PQYDYDPKKAEALLDEAGLKRGPDGVRLRFNHVSIPYGDDFKRSGEFIRQQLKKVGIEVE 397
               Y+P+KA+ LL  AG+K G + + L    V  PY  + K   E ++    K+G++V+
Sbjct: 349 KDAAYNPEKAKELLKAAGVKEGTE-ITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGLKVK 407

Query: 398 LLNYDLPTFLRKIYTEYDFDTLNAYYAAFADPQIGVQRRFWSQTIRPGSAWSNASGYSNP 457
           +++Y+   ++++        +L  +     DP   +   +    I      +N S + +P
Sbjct: 408 IVSYEWGEYIKRTKNGEHDVSLIGWTGDNGDPDNWLGTLYSCDAI----GGNNYSMWCDP 463

Query: 458 KVDALLEAAAVEPDPQKRKALLGEFQLIVQTELPSISLLELKQFRVWSSRLKGVNVGPIG 517
             D L++ A V  D ++R  L  + Q +++ ++P   +      +  S++++G  V P G
Sbjct: 464 AYDKLIKQAKVVTDREQRTVLYKQAQQLLKQQVPITPVAHSTVNQPLSAKVEGFKVSPFG 523