Pairwise Alignments

Query, 536 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

Subject, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  402 bits (1032), Expect = e-116
 Identities = 227/526 (43%), Positives = 312/526 (59%), Gaps = 7/526 (1%)

Query: 8   LRLAAAGASLAAVPMARAADGSPVRGGHLVSIVVPEPQTLGLTVSN---PTIVIAINVYD 64
           +R A   A LAA   A AA   P   G L  +   EP  L +T+ N   P + ++  V +
Sbjct: 10  IRSALLAALLAAGLAAHAAP--PSHSGTLTLLSTSEPTAL-VTIGNVATPILSVSAKVTE 66

Query: 65  GLVTYDGTGAPRPQLAESYEQAPDGRSITFRLRKGVTWHDGVPFTAADVKYSILEVVKKT 124
           GL+ YD    P+PQLA  +  +PDG + TF LR+GV WHDG  FT+ADV YSI E++KK 
Sbjct: 67  GLLKYDYDVNPQPQLATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADVAYSI-ELLKKI 125

Query: 125 HPRGIGTYSQLQDIETPDDHTVILRLAKPSPVIWSALNSSETQILPKHLYEGTDPLTNPW 184
           HPRG  T++ L  I+TPD +T ILRL+KP+P +  AL ++ET I+PKH+YEGTDP  NP 
Sbjct: 126 HPRGRNTFANLTAIDTPDKYTAILRLSKPAPYLIRALVATETPIVPKHIYEGTDPANNPN 185

Query: 185 NTKPIGTGPFIFKEWVRGSHVTLERNPNYWDAGKPYLDRLTFRFVPDAGARAAALETGEA 244
           N  PIGTGPF FKEWVRGSH+  ERN +YWD  KP++D+L  RFV D  A A A ETG  
Sbjct: 186 NNAPIGTGPFKFKEWVRGSHIVYERNNDYWDKPKPFVDQLIVRFVTDPAAAAVAFETGTV 245

Query: 245 QYVPLSPVPLSDVERLAKRPDLVVETRGWEAVAPVFFLDFNMRRPQFQDVRVRRAIALAI 304
                +PVPL+D+ERL K P L  ET+G    + V  L+FN+    F++ +VR+A+A AI
Sbjct: 246 DLGYRTPVPLADLERLKKVPALRFETKGNSYSSNVTRLEFNLDNEYFKNEKVRQAVAHAI 305

Query: 305 DKKALARTVWYGFAEPATGPVPAFQTAFAATGLPQYDYDPKKAEALLDEAGLKRGPDGVR 364
           D+  + + V YG+ + +  P+     AF       Y +D KKA ALLDEAG  +   GVR
Sbjct: 306 DRNVIVKVVNYGYGQVSYSPIAPGLKAFHDPAPSPYAFDVKKANALLDEAGFPKKAGGVR 365

Query: 365 LRFNHVSIPYGDDFKRSGEFIRQQLKKVGIEVELLNYDLPTFLRKIYTEYDFDTLNAYYA 424
                   P G D  R  +++R  L ++GI V +   D   F+++IYT+ DF   +   +
Sbjct: 366 FSVPLDFNPIGADGPRLADYLRSALARIGIAVTVRAQDPSAFIKRIYTDRDFAFTHNGAS 425

Query: 425 AFADPQIGVQRRFWSQTIRPGSAWSNASGYSNPKVDALLEAAAVEPDPQKRKALLGEFQL 484
              DP +GVQR +WS+    G  +SN + Y NP VD LLE AAVE DP KR  L  +FQ 
Sbjct: 426 NLFDPTVGVQRLYWSKNFIKGVPFSNGTHYQNPVVDKLLEDAAVENDPGKRLKLFKDFQD 485

Query: 485 IVQTELPSISLLELKQFRVWSSRLKGVNVGPIGVYSSFADAWLEPA 530
            V  ++P ++L +     + + R+   ++   GV S+ AD W++ A
Sbjct: 486 TVARDVPDLNLYQPVFITIANQRVHDHSLTADGVESNLADVWVDDA 531