Pairwise Alignments

Query, 535 a.a., Oligopeptide-binding protein AppA from Xanthobacter sp. DMC5

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  152 bits (384), Expect = 3e-41
 Identities = 145/554 (26%), Positives = 241/554 (43%), Gaps = 71/554 (12%)

Query: 5   ALKLFAVAAAFIGLLPAAVLAQTVP--SEGTPKRGGTLVTIIQPEPTVLTTTVNN---QF 59
           ALK   +AA  +  +P A  A T+   SE +P            +      TV N   QF
Sbjct: 5   ALKPLLLAAGLLACMPLAQAASTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNRLTQF 64

Query: 60  SNGAVSVNIYDGLVAYDDNLGLKPALAESWEISPDKLTITFHLRHGVKWHDG------AP 113
             G   V               +P LA SW+IS D LT TFHLR GVK+H          
Sbjct: 65  KRGGTEV---------------EPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRD 109

Query: 114 FTSADVRFS------ALEIWKKVHSRGRLTFAEL------EDVETPDAYTAIFRFRA--P 159
           F + DV F+      A   +++ +      F ++      + V+  D +T  F       
Sbjct: 110 FNADDVLFTFNRLLDAQSPFRQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDA 169

Query: 160 SLVVLSALN-------AWEGQVLPKHLYENTDILKNPHNVEPVGTGPFKFKSWTKGEAIE 212
           S V   A++        +  Q+L +   E         N +PVGTGPF FK + K   I 
Sbjct: 170 SFVQNLAMSFASVQSAEYAAQLLKQGKAEEI-------NQKPVGTGPFVFKRYQKDSQIR 222

Query: 213 LVRNADYWDAGKPYLDRVIYRFIPDGGARAAAIEIGDVGYAAFDPVPFADIERVRKLPNL 272
            V N  YW      LD +++   PD  +R   ++ G+   + + P P ADIE +++ PNL
Sbjct: 223 YVANKQYWKPEDVKLDNLVFAITPDAASRLQKLKAGECQVSGY-PRP-ADIEVMKQDPNL 280

Query: 273 KV-ESRGYEWNAKYYFLEFNLRNPILADIRVRRAFAHAIDRQGLADTVWFGLVAPATGPI 331
            V +  G+       FL +N+ +P L  ++VR+A   AID+  +   V+      A   +
Sbjct: 281 HVLQQAGFNLG----FLAYNVTHPPLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNAL 336

Query: 332 PSFTKAFYTADVPTYAFDPKEAERLLDEAGYKRGANGVRFSINQDFQPFNENFRKTAEYI 391
           P   +  Y   +    +DP +A+ LL EAG   G     +++    +  N N R +A+ I
Sbjct: 337 PP-AQWSYDPTIKDAPYDPTKAKALLKEAGVAPGTTVNLWAMTVQ-RASNPNARMSAQMI 394

Query: 392 RQNLKRVGVEVNVRSQDLGAFVRRVYGSYDFDINTGQFSVFIDPE--LGLLRQFWSKSIA 449
           +Q+ ++VG++ N+ S + G +++R        +  G      DP+  LG+L         
Sbjct: 395 QQDWEKVGIKANIVSYEWGEYIKRAKNGEHDAMIYGWTGDNGDPDNWLGVLYS------C 448

Query: 450 PGIPWTNASGYADPGTDKVIEGIKSAADPEQRVALFHELQRRVQRDLPVLPLLELKQFTV 509
             +  +N + + +P  DK+++  K + D EQR+  + + Q+ ++  +P+ P+     F  
Sbjct: 449 AAVKGSNYAKWCNPAYDKLVQQAKVSNDREQRIKWYQQAQKILKEQVPITPIANSTVFQP 508

Query: 510 YNTNVRGVSVRPDG 523
               V+   + P G
Sbjct: 509 LRKEVKDFKISPFG 522