Pairwise Alignments

Query, 343 a.a., Holliday junction ATP-dependent DNA helicase RuvB from Xanthobacter sp. DMC5

Subject, 440 a.a., recombination factor protein RarA from Pseudomonas simiae WCS417

 Score = 57.4 bits (137), Expect = 7e-13
 Identities = 73/315 (23%), Positives = 126/315 (40%), Gaps = 74/315 (23%)

Query: 20  LRPQLLSEFVGQAQARANLEIFIKAARARGEALDHVLFVGPPGLGKTTLAQIMSREMGVG 79
           LR   L E+VGQ    A  +  ++ A  +G AL  ++F GPPG+GKTTLA+++++     
Sbjct: 17  LRSTNLDEYVGQEHLLARGKP-LREALEQG-ALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 80  FRSTSGPVIAKAGDLAAILTNLEE-------RDVLFIDEIHRLSPAVEEILYPAMEDYEL 132
           F + S  V+A   ++   +   ++       R +LF+DE+HR + + ++   P +ED  L
Sbjct: 75  FETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL 133

Query: 133 DLVIGEGPAARSVKISLPKFTLVGATTRSGLLTTPLRDRFGIPVRLQFYTVEELEKIVVR 192
                                 +GATT +                       EL   ++ 
Sbjct: 134 --------------------IFIGATTENPSF--------------------ELNNALLS 153

Query: 193 GARVMGIAIAPDGATE-IARRARGTPRIAGRLLRRVRDFALVAEAERIDRKIADRALLAL 251
            ARV  +    + A + + +RA    +  G+   RV +                  +L  
Sbjct: 154 RARVYVLKSLDEAAMQKLLQRALSEDKGLGKRQLRVSEEGF--------------KILLT 199

Query: 252 EVDAAGLDAMDRRYLTVIAE----FYGGGPVGVDTLAAALSEPRDAIEEIVEPFLVQQGF 307
             D  G     RR+L ++         G  +GVD L + L + R   ++  E F  Q   
Sbjct: 200 AADGDG-----RRFLNLVENASDLAEDGSEIGVDLLQSLLGDTRRRFDKGGEAFYDQISA 254

Query: 308 IQRTPRGRMLTGAAF 322
           + ++ RG    GA +
Sbjct: 255 LHKSVRGSNPDGALY 269