Pairwise Alignments

Query, 299 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  140 bits (354), Expect = 4e-38
 Identities = 104/317 (32%), Positives = 155/317 (48%), Gaps = 51/317 (16%)

Query: 4   YLFATLILVAIATIAALALNLQWGLGGLVNFGLFGFYMLGAYVCAL------LDVNGVPP 57
           YL   +IL  I  +  L LN+  GL GL++ G   FY +GAY  AL      L    V P
Sbjct: 116 YLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWTVLP 175

Query: 58  LAAMAAAVAVTAVASALVSLISIRLSEDYLAIVTLGFAECLRLFISYEDWL--TRGTLGV 115
           LAA+AAA+A       ++    +R+  DYLAIVTLGF E +RL ++  +WL  T G  G+
Sbjct: 176 LAAIAAALA-----GCILGFPVLRMHGDYLAIVTLGFGEIIRLVLN--NWLSFTGGPNGM 228

Query: 116 P------------------GIVRPFAQSLGPQWSDAVFLAFAYACLASSFLLL----RRI 153
           P                  GI  PF +  G  ++  +   F Y  L    L +     R+
Sbjct: 229 PVPSPTFLGLEFGKRAKDGGI--PFHEFFGIDYNPNIKFLFIYIVLFLVVLAVLYIKHRL 286

Query: 154 TRAPFGRLVRATRDDPTVAEALGKNVLALRAKVFAIGGALLGVAGSLHAFYYTYIDPSQF 213
           TR P GR   A R+D     ++G N + ++   F IG +  G+AG   A Y  +++PS F
Sbjct: 287 TRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTIGASTAGLAGVFFASYQGFVNPSSF 346

Query: 214 GTTLTAYAFMAVIIGGRGSHIGVLVAGFTVILLLEGSRFLSDVIPFLDGGQLAALRLMLV 273
               +A     V++GG GS +GV++A F + +  E  R  S+             R++L 
Sbjct: 347 TFFESALILAIVVLGGMGSTVGVVIAAFVLTVAPELLRSFSE------------YRVLLF 394

Query: 274 GVSLIAILIYRPEGLVR 290
           GV ++ ++I+RP GL+R
Sbjct: 395 GVLMVVMMIWRPRGLIR 411