Pairwise Alignments

Query, 919 a.a., DNA gyrase subunit A from Xanthobacter sp. DMC5

Subject, 752 a.a., DNA topoisomerase IV subunit A from Pseudomonas putida KT2440

 Score =  362 bits (928), Expect = e-104
 Identities = 252/744 (33%), Positives = 397/744 (53%), Gaps = 81/744 (10%)

Query: 21  SITEELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSMHENGYEWNKQYRKSARVVG 80
           S+ +   ++YL+Y+M VI+ RALP + DGLKPV RRI+++M E G + + +++KSAR VG
Sbjct: 16  SLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKKSARTVG 75

Query: 81  DVIGKYHPHGDQSVYDALVRMAQTFAMRVPLVDGQGNFGSVDGDAP-AAMRYTEVRLEKV 139
           DV+GK+HPHGD + Y+A+V MAQ F+ R  LVDGQGN+G+ D     AAMRYTE RL + 
Sbjct: 76  DVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRY 135

Query: 140 TNTLLDDLDKETVDFQDNYDNSEHEPTVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEI 199
              LL ++ + TVD+  N+D +  EP VLPA+ PN+L+NG  GIAVGMAT++PPHNL E+
Sbjct: 136 AEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPPHNLREV 195

Query: 200 IDVTVALLDDPLLEPEALLDLLPGPDFPTGA-LILGRTGIRQAYLTGRGSILMRAKVAIE 258
               V LLD+P    E L + + GPD+PT A ++  R  I + Y +GRGSI MRA   +E
Sbjct: 196 ASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYESGRGSIRMRAVYRVE 255

Query: 259 HIRKDREALIVTEIPYQVNKATMIEKIAELVRDKRVEGISEIRDESDRDGMRVVIEIKRD 318
                   ++VT +P+QV+ A ++E+IA  ++ K++  ++++RDESD +    ++ I R 
Sbjct: 256 D-----GDIVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRIVIIPRS 310

Query: 319 AQADV--VLNNLYRLTLLQTSFGVNMVALS-GGKPGILTLHDVLTAFIAFREEVISRRTK 375
            + DV  ++ +L+  T L++++ VN+  +   G+P +  L  +L  ++ FR   + RR +
Sbjct: 311 NRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTLLVEWLEFRTNTVRRRLQ 370

Query: 376 FLLRKARDRAHVLVGLAIAVANIDEVIRLIRTAPDPATARESLMGRDWPAKDMAPLIALI 435
             L K   R H+L GL  A  N+DEVI +IRT   P   +++L+ R              
Sbjct: 371 HRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYP---KQALIER-------------- 413

Query: 436 ADPRHKLKEDGTYRLSEVQARAILDLRLQRLTALGRDEIAEELDKLAAEIADYLEILASR 495
                       + L+E+QA  IL+ RL++L  L   +I  E D+L  E A    +L S 
Sbjct: 414 ------------FELTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSE 461

Query: 496 PRMRAIIRDELLAIKAEFGTPRRTEIV--EGFGDLEDEDLIQREEMVVTVSHAGYIKRVP 553
            ++R ++R EL+     +G  RR+ IV       L + +L+  E + V +S  G+++   
Sbjct: 462 AKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAK 521

Query: 554 ----LSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVYKMKVWRLPL 609
                +T  + + G   ++A   R   F             +   S G+ Y +    LP 
Sbjct: 522 GHDIDATGLSYKAGDGFKAAAAGRSNQF------------AVLIDSTGRSYSLAAHSLPS 569

Query: 610 AAPQARGKALINILPLEQDERITSVVLLPEDEGENQRLQIMFATTG-GTVRRNALTDFQQ 668
           A  + +G+ L   L           VLLP+D+     L ++ +  G G V +    D Q 
Sbjct: 570 A--RGQGEPLTGRLTPPPGATF-ECVLLPDDDA----LYVVASDAGYGFVVKG--EDLQA 620

Query: 669 VNRNGKIAMKLAEG------EAIADVGLCTEEDDVLLTTAAGACIRFPVTEVRLF---KG 719
            N+ GK  + L  G        +AD     E+D +   T  G  + F V+++      KG
Sbjct: 621 KNKAGKGLLSLPNGAKVMTPRPVAD----REQDWLAAVTTEGRLLVFKVSDLPQLGKGKG 676

Query: 720 RDSVGVRGIRL-EESDSVISMAII 742
              +GV G R+    + V  +A+I
Sbjct: 677 NKIIGVPGDRVASREEFVTDLAVI 700



 Score = 32.7 bits (73), Expect = 9e-05
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 14/125 (11%)

Query: 800 LTVSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERNGRLVASFPVEDADQ--IMLVTDGG 857
           +  S+ GYG      + +   + GKG++++       +++   PV D +Q  +  VT  G
Sbjct: 602 VVASDAGYGFVVKGEDLQAKNKAGKGLLSL---PNGAKVMTPRPVADREQDWLAAVTTEG 658

Query: 858 QLIRCPVDGIRIVGRASQGVIVFDTAEGERVVSVEHISEDTGA--EG-----EAGESGVD 910
           +L+   V  +  +G+     I+     G+RV S E    D     EG     +AG+  + 
Sbjct: 659 RLLVFKVSDLPQLGKGKGNKII--GVPGDRVASREEFVTDLAVIPEGATLVLQAGKRTLS 716

Query: 911 APGDD 915
              DD
Sbjct: 717 LKADD 721