Pairwise Alignments
Query, 1045 a.a., UvrABC system protein A from Xanthobacter sp. DMC5
Subject, 1947 a.a., Excinuclease ABC subunit A, dimeric form from Variovorax sp. SCN45
Score = 646 bits (1667), Expect = 0.0
Identities = 424/1082 (39%), Positives = 588/1082 (54%), Gaps = 129/1082 (11%)
Query: 27 TLSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYAR 86
++ +RGAR+HNL+N+DL+I + V TG SGSGKSSL FDT+YAEGQRRYVE+ SAYAR
Sbjct: 5 SIRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYAR 64
Query: 87 QFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARTGVPYSPA 146
QFL+ M KP VD+++G+ PAI+I+Q ++ RSTVGT+TE+ D+++LL+AR +
Sbjct: 65 QFLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAADLFDRE 124
Query: 147 TGLPIESQT----VSQMVDRTLALPEGTRLYLLAPVVRGRKGEYRKELADWMK-KGFQRV 201
T LP+ + +Q+ +R A + RL + PV +E+ W+ GF RV
Sbjct: 125 TALPVRHDSPDSIYAQIAERAAAAGD-PRLVVTFPVELPASTT-AEEVTQWLSASGFTRV 182
Query: 202 KVNGAFHEIAEAPALDKKFKHDIDVVVDRIVVRADLAQRLADSFETALGLADGIAVAEFA 261
+ E+A P +K +DVV DR + R+ ++ E AL G
Sbjct: 183 QSE---REVA-TPTGPRKV---LDVVADRFRASSAERSRVVEAIEVALKRGSGRVTVHAT 235
Query: 262 DEKDEAGAPRRII-FSEKFACPVSGFTIPEIEPRLFSFNNPFGACPACDGLGVEQTIDPD 320
E AP + FS CP S + P +FSFN+ GAC C G G +D
Sbjct: 236 GA--EENAPTDVWKFSTGLHCPESDIRYADPIPSMFSFNSAVGACDTCRGFGRVIGVDLG 293
Query: 321 LVVPDKARSLKQGAIAPWAKSTSPYYGQTLDALAKHYH---FKLNVPFADLPEQAREVLL 377
LV+P+ +L+ GAI +P + + D L +H + P+ L ++ + ++
Sbjct: 294 LVIPNDKLTLRAGAIKT---IQTPAWKEAQDDLMRHAETAGIPRDTPWNKLTDEQKHWVI 350
Query: 378 FGSGSEKIT------------FHYDDGM-------------RAYETSKTFEGVVRNLD-- 410
G+ + K F Y + R+Y T G LD
Sbjct: 351 EGTPNYKEGNWNKQWYGVRRFFAYLESKAYKMHIRVLLSKYRSYTQCPTCSGARLKLDSL 410
Query: 411 -----------------RRWKETDSDWAREEISKYFSTVPCKVCNGYRLKP--------- 444
+R+ T + W R ++ +P + L P
Sbjct: 411 IWRIGSKEDADAVLPPEKRFMPTGAKWTRAQLE----ALPGLCLHDLMLLPIERLRKFFD 466
Query: 445 ---EALAVKIAGRHIGEIGELSVRAAAGWFESL-----PAQLTDKQNEIAGR--ILKEIR 494
+ +A +AG G L+ AA+ ES PA +Q E + +EI
Sbjct: 467 RMGQGMAPSLAG---GGQAALASPAASNEAESPHPNLPPAGEGARQGEAQALKLLFEEIT 523
Query: 495 ERLRFLLDVGLEYLTLARSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDN 554
RLR+L DVG+ YLTL R S TLSGGE QRI L + +G+ L L+VLDEPSIGLH RD
Sbjct: 524 TRLRYLHDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDM 583
Query: 555 ERLLGTLKHLRDLGNTVIVVEHDEDAILAADHVVDVGPGAGIHGGEIVAQGTPAEILANP 614
R+ + LRD GNT++VVEHD +LAAD V+D+GPG G GG+IV GT + L +
Sbjct: 584 NRITEAMLRLRDAGNTLVVVEHDPAVMLAADRVIDMGPGPGARGGQIVFDGTTDQ-LRDA 642
Query: 615 ASLTGRYLTGELSVGVPARR--KPNPKRMLKLTGARGNNLKNVTAEIPLGLFTCITGVSG 672
+LTG+YL G +G+ +R N R++ L G R +NLKN+T + PL C+TGVSG
Sbjct: 643 DTLTGQYLGGRKKIGMGFKRLVSENTHRLI-LEGVREHNLKNITVDFPLARLVCVTGVSG 701
Query: 673 GGKSTLLIDTLYKAVARRLNGASEAPAPFDKLEGLEHLDKVIDIDQSPIGRTPRSNPATY 732
GKSTL+ D L A+ R A+E P D++ G +HL V+ +DQSPIG+T RSNPA+Y
Sbjct: 702 SGKSTLIQDVLAPALMRHFGKATETPGAHDRMLGADHLGDVVFVDQSPIGKTARSNPASY 761
Query: 733 TGAFTPIREWFAGLPEAKARGYGAGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCD 792
GA+ IRE FA ++ RGY A +FSFN GRC C G G +EM FL DVY+ C
Sbjct: 762 VGAWDAIREIFATAALSRQRGYTASKFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCP 821
Query: 793 VCKGKRYNRETLEVTFKNK----SIADVLDMTVEEGAQFFKAVPSVREKLETLHRVGLDY 848
C GKRY E LEV + K ++ADVLD+TV E A F+A V L+ + VGLDY
Sbjct: 822 DCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAVFEADRDVLRVLQPISDVGLDY 881
Query: 849 VKVGQQATTLSGGEAQRVKLSKELSRRATGR-----------TLYILDEPTTGLHFHDVK 897
VK+GQ TLSGGEAQR+KL+ L+ A G TL++ DEPTTGLHF D+
Sbjct: 882 VKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTLFLFDEPTTGLHFDDIA 941
Query: 898 KLLEVLHELVEQGNSVVVIEHNLEVIKTADWILDLGPEGGDGGGEIVVAGTPETVAASKR 957
+L+ L +L+E G+S++VIEHNL+VI+ +DW++DLGPEGG+GGG++V GTPE + ++
Sbjct: 942 RLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGGQVVAEGTPEQLRENRA 1001
Query: 958 SHTGRFLAEVLARRPFADDRKASAGTDAKPAAAGRGKAARRPVAEDVEAGTDTPVADAAA 1017
S TG LA D + + G DA A +AARR +A +A P +DA
Sbjct: 1002 SLTGAALA----------DYELAIGPDAYKVAE---RAARRYIANAKKA----PGSDAVQ 1044
Query: 1018 IV 1019
IV
Sbjct: 1045 IV 1046
Score = 513 bits (1321), Expect = e-149
Identities = 298/609 (48%), Positives = 382/609 (62%), Gaps = 44/609 (7%)
Query: 400 KTFEGVVRNLDRRWKETDSDWAREEISKYFSTVPCKVCNGYRLKPEALAVKIA------- 452
K F+ VR+ D + +E +A E+ + V C C G RL A AV
Sbjct: 1345 KVFDDSVRDDDNKGRE--QTFAEPEVED-LADVACPTCEGTRLNATARAVSFGASLANGS 1401
Query: 453 -GRHIGEIGELSVRAAAGWFESLPAQLTDKQNEIAGRILKEIRERLRFLLDVGLEYLTLA 511
G I E+ +SV WFE L LT ++ EIA ++ EI+ RL FL +VGL YLTL
Sbjct: 1402 GGIGITELARMSVTEVRQWFEGLA--LTGREAEIARDLVPEIKSRLEFLEEVGLGYLTLD 1459
Query: 512 RSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNERLLGTLKHLRDLGNTV 571
R + TLSGGE+QRIRLA+Q+GS L GV YVLDEP+IGLH RDN+ LL L L + GNT+
Sbjct: 1460 RGAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHARDNQILLNALHKLGEKGNTL 1519
Query: 572 IVVEHDEDAILAADHVVDVGPGAGIHGGEIVAQGTPAEILANPASLTGRYLTGELSVGVP 631
+VVEHDED I ADH++D+GP AG GG +VA+GT A+I S TGRYL + +
Sbjct: 1520 VVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAEGTVADIQNAGDSQTGRYLRDAIRHPLQ 1579
Query: 632 ARRK---PNPK-----RMLKLTGARGNNLKNVTAEIPLGLFTCITGVSGGGKSTLLIDTL 683
ARR P+P+ L + GA +NL+++TA +PL +TGVSG GKSTL D L
Sbjct: 1580 ARRSIPSPDPQAEDNGEWLTVHGADLHNLQDLTATLPLHRLVVVTGVSGSGKSTLARDVL 1639
Query: 684 YKAV-----------ARRLNGASEAPA--PFDKLEGLEHLDKVIDIDQSPIGRTPRSNPA 730
+V R + A + PA K++G E +D+V+++DQ+PIG+TPRS PA
Sbjct: 1640 LASVQGIVVQRMTKAGRDADAAGKRPAWAGCRKVDGYETIDRVLEVDQTPIGKTPRSCPA 1699
Query: 731 TYTGAFTPIREWFAGLPEAKARGYGAGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVT 790
TY G + IR+ FA EAKARGYG RFSFN GRC C+G GV IEM FLPDV V
Sbjct: 1700 TYIGFWDTIRKLFADTLEAKARGYGPARFSFNTGEGRCPGCEGAGVRTIEMSFLPDVKVP 1759
Query: 791 CDVCKGKRYNRETLEVTFKNKSIADVLDMTVEEGAQFFKAVPSVREKLETLHRVGLDYVK 850
C+VC G R+N ETL V+++ KSI DVL M V+E +FF ++P++ L+ L VGL Y+
Sbjct: 1760 CEVCHGARFNPETLAVSWRGKSIGDVLKMEVDEAVEFFASMPNIAHPLQLLKDVGLGYLT 1819
Query: 851 VGQQATTLSGGEAQRVKLSKELSR---------RATGRTLYILDEPTTGLHFHDVKKLLE 901
+GQ + TLSGGEAQR+KL ELS+ + TLY+LDEPT GLH DV+KL+
Sbjct: 1820 LGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQKAPHTLYVLDEPTVGLHMADVEKLIH 1879
Query: 902 VLHELVEQGNSVVVIEHNLEVIKTADWILDLGPEGGDGGGEIVVAGTPETVAASKRSHTG 961
VLH LV G+SVVVIEH+L++I ADWI+DLGPEGG+ GG IV A PE V +HTG
Sbjct: 1880 VLHRLVNGGHSVVVIEHDLDLIAEADWIIDLGPEGGNAGGRIVAAAPPEEV-VRLGTHTG 1938
Query: 962 RFLAEVLAR 970
LA VLAR
Sbjct: 1939 VALAPVLAR 1947
Score = 213 bits (541), Expect = 1e-58
Identities = 124/325 (38%), Positives = 188/325 (57%), Gaps = 15/325 (4%)
Query: 15 APVREVPRRDARTLSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDTIYAEGQ 74
A ++ P DA + + AREHNLKN+ ++IPR V TG+SGSGKS+LAFD ++ EGQ
Sbjct: 1032 ANAKKAPGSDA--VQIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQ 1089
Query: 75 RRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRL 134
RRY+ESL+AYAR ++ +P+VD + G+ P ++IEQ+ + +STVGT TE++ ++RL
Sbjct: 1090 RRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRL 1149
Query: 135 LWARTGVPYSPATGLPIESQTVSQMVDRTLALPEGTRLYLLAPVVRGRKGEYRKELADWM 194
L+ + G+ + G ++ QT + + + +G + LLAP+V RKG Y ELADW
Sbjct: 1150 LYVKLGIQHCIHDGAAVQPQTPDSIAAQLMRNFKGQHIGLLAPLVSNRKGVY-TELADWA 1208
Query: 195 K-KGFQRVKVNGAFHEIAEAPALDKKFKHDIDVVVDRIVV----RADLAQRLADSFETAL 249
+ +GF ++V+G F P +D+ +H I++ V + V +L + L + E
Sbjct: 1209 RPRGFTHLRVDGDFLPTTGFPRIDRFKEHSIELPVASLDVLPSKETELREALTKALEHGK 1268
Query: 250 GLA------DGIAVAEFADEKDEAGAPRRIIFSEKFACPVSGFTIPEIEPRLFSFNNPFG 303
G+ DG+ A A AG R +FS ACPV + E++PRLFS+N+ G
Sbjct: 1269 GVVHVLSELDGLRAAMMAG-VSAAGIGRVHVFSTLRACPVCSTSYAELDPRLFSYNSKHG 1327
Query: 304 ACPACDGLGVEQTIDPDLVVPDKAR 328
CP C G GV+ + D V D R
Sbjct: 1328 WCPDCVGTGVKLSKDQRKVFDDSVR 1352
Score = 161 bits (408), Expect = 4e-43
Identities = 104/288 (36%), Positives = 162/288 (56%), Gaps = 47/288 (16%)
Query: 434 CKVCNGYRLKPEALAVKIAGR----HIGEIGELSVRAAAGWFESLPAQLTDKQNEIAGRI 489
C C+G R +PE L V++ + ++ ++ +L+V AA FE+
Sbjct: 820 CPDCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAVFEAD--------------- 864
Query: 490 LKEIRERLRFLLDVGLEYLTLARSSGTLSGGESQRIRLA---SQIGSGLT---------G 537
+++ L+ + DVGL+Y+ L + TLSGGE+QR++LA ++ G T G
Sbjct: 865 -RDVLRVLQPISDVGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKG 923
Query: 538 VLYVLDEPSIGLHQRDNERLLGTLKHLRDLGNTVIVVEHDEDAILAADHVVDVGPGAGIH 597
L++ DEP+ GLH D RL+ L+ L + G+++IV+EH+ D I A+D ++D+GP G
Sbjct: 924 TLFLFDEPTTGLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEG 983
Query: 598 GGEIVAQGTPAEILANPASLTGRYLTG-ELSVGVPA---------RRKPNPKRM-----L 642
GG++VA+GTP ++ N ASLTG L EL++G A R N K+ +
Sbjct: 984 GGQVVAEGTPEQLRENRASLTGAALADYELAIGPDAYKVAERAARRYIANAKKAPGSDAV 1043
Query: 643 KLTGARGNNLKNVTAEIPLGLFTCITGVSGGGKSTLLIDTLYKAVARR 690
++ AR +NLKN++ +IP G F+ +TGVSG GKSTL D L+ RR
Sbjct: 1044 QIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRR 1091
Score = 63.5 bits (153), Expect = 1e-13
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 9 RSNPAEAPVREVPRRDARTLSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDT 68
RS P+ P E + L+V GA HNL+++ +P LVV TG+SGSGKS+LA D
Sbjct: 1582 RSIPSPDPQAE---DNGEWLTVHGADLHNLQDLTATLPLHRLVVVTGVSGSGKSTLARDV 1638
Query: 69 IYAEGQRRYVESLSAYARQFLEMMQKP------DVDQIDGLSPAISIEQKTTSKNPRSTV 122
+ A Q V+ ++ R ++P VD + + + ++Q K PRS
Sbjct: 1639 LLASVQGIVVQRMTKAGRDADAAGKRPAWAGCRKVDGYETIDRVLEVDQTPIGKTPRSCP 1698
Query: 123 GTVTEIYDYMRLLWART 139
T +D +R L+A T
Sbjct: 1699 ATYIGFWDTIRKLFADT 1715
Score = 35.0 bits (79), Expect = 5e-05
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 293 PRLFSFNNPFGACPACDGLGV---EQTIDPDLVVP 324
P FSFN G CP C+G GV E + PD+ VP
Sbjct: 1725 PARFSFNTGEGRCPGCEGAGVRTIEMSFLPDVKVP 1759